FMO04275.5prime Sequence
1089 bp (955 high quality bases) assembled on 2008-07-30
> FMO04275.5prime
CATAAAACAAAGTTATCAGTCGACATGGCCATGACCGAAATGTCCGAGGA
GGATCTGTCGGCGCCCGAGGAAGAGGAGGATTTGGGACCCAATATAGGCC
TCTACATAGGCGGTCGAAATGCTGCCGGACAGAGACAAGGTAGAGGTTGG
GCCATCCTGCCCAACGGAGATCAGTATGATGGGAACTACAGGAAGGGTCG
CCGTCACGGCATCGGGGTGTACGTGTTCAAGGATGGTTCACGATACTACG
GACAGTATCGCTGCGGGAAGCGTTGTGGGCGCGGCATCTTCATCTATCCG
GACGGATCCGTGTACGAGGGCAACTGGCGAAAGAACTTGAAGCACGGCAA
GGGCCGGTACAAGTATGTGAATGGGGACAACTATTCGGGTGACTGGTTCA
AGGGACAACGTCATGGGGTGGGCATCTATCACTTTAACAGCGGAAAGGAT
GGCTGCTGCCTGTCCGTCAGAATGAAGGCCACCTGGAACAGCAACATGCG
AACGGGTCCCTTCGAGCTGTATATCGGCAATGAGGACAAGTGCACAATAC
TTCACGGAATTTGGGATAACCTGTACCCGAGTGGACCGGCCGTGTTTAGC
TTCAACAATCGATACCTTCTGCTGGGCTATTTCCTGCCCGCCAGTTACAA
CATGAAGGCGATCAGCAACGAAGACGAGATGGAGGACGCCGAGGAGCGCT
TGGAGGACGAGATGGGTGAAGCGGAGCCAATGGAACCAACACTATGGTTC
GCCCAGGAGATGGCCGTGTATGACTTTTCGCTGCTGCCGCGGAGCCAGTG
CCTCTGGCCATTTCCGATTCCGAGCTGTCCGTCTGCTCGCTCTCCACTGA
GCCGAGCATGCGCAGCGAGGAGAAGATCAGTTGGTATGGAGAGGGTTGAA
GAGGCCGAGGGCGAGGAGGGCGGCGAGATGTGAGTGCTTCCCATGCGAGT
GCCGATCTTCACCGGATGTCAGGCGAGGTGGAGACGAAGAGCGAGGTTGT
GCCAAAATCGACGCCTATCCATGCTGCATGGAGATCCTCAGGCAACCAGA
GTGTCCAGATCCTGCAGCTTTTCAGAACCATTCGGTTTG
FMO04275.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:06:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5458-RA | 1262 | CG5458-RA | 139..1171 | 24..1063 | 4920 | 98.8 | Plus |
| CG16974-RB | 5528 | CG16974-RB | 4593..5528 | 1063..121 | 4435 | 98.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:06:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13183828..13184784 | 100..1063 | 4315 | 98.7 | Plus |
| 2L | 23513712 | 2L | 13183588..13183663 | 24..99 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:06:46 has no hits.
FMO04275.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:30 Download gff for
FMO04275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5458-RA | 131..1174 | 15..1067 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:48:26 Download gff for
FMO04275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5458-RA | 131..1174 | 15..1067 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:03 Download gff for
FMO04275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5458-RA | 131..1174 | 15..1067 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:03 Download gff for
FMO04275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13183580..13183663 | 15..99 | 96 | -> | Plus |
| 2L | 13183828..13184782 | 100..1061 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:30 Download gff for
FMO04275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13183580..13183663 | 15..99 | 96 | -> | Plus |
| arm_2L | 13183828..13184782 | 100..1061 | 98 | <- | Plus |
