FMO04276.5prime Sequence
1126 bp (852 high quality bases) assembled on 2008-07-30
> FMO04276.5prime
AGCATACATAAAAAGAAGTTATCAATCGACATGTTACTTCCGCGGTATTT
TTGCTGGAACCTCCAACGCTGCACGATGGCGTTTTACGCTGTAGCCAGTG
GGCGGCGGTCTGGAGTCTACGGCTCTTGGGCAGAGTGCGAGGAGCAGGTC
AAGGGTTTCAAGAACGCCAAATACAAGAAGTTTAAGACACGCCAGGAAGC
GGATCAGTTCGTTAATGGCTGCAAGTCGTATGCTCCGCAGGATGTGGCCG
TGCCGCTGGGCAAGGAAAAGGCGTCACTGGCCAGTTGGAAAAACAATATC
GAAGTGAATAAGAACCCCAAGTACACAGATGAGTGGCCCGAAGAGGATCA
CGACCTAGCCGAGGATGATCTGAATGCTGCCATGAACGAGGTTGAGGGAG
ATCCAAAGCCATCTAACAGTAGCAATTTACCAGACATTCTCAATCGCAAG
CGGAAGGGCACGACCAGCGGCGATAAGCGGAACAAGATCCCACGTCATGC
CTCTCAGGTCTCAAAAGCCACAGGACTCAAGCAAGTGGGTGCCTTCCAGT
TTGAAATCAATGCAAAGGGCTATGTCATTGTGTACACAGATGGCTCCTGC
ATAGGCAACGGACGAGCCGGCGCCTGTGCCGGCTATGGCGTTTATTTCGG
CAAGAATCACCAGCTAAACGCAGCCAAGCCCGTGGAAGGACGCGTTACAA
ATAATGTAGGTGAAATACAAGCGGCCATTCATGCCATTAAAACAGCTCTT
GACTTGGGAATACAGAAGCTGTGCATCAGCACAGACTCTCAGTTTTTGAT
CAACTCCATAACGCTGTGGGTTGCGGGTTGGAAAAAAAGGGATTGGAAGC
TAAAGAACAATCAGCCTGTAAAAAACGTTGTTGACTTCAAGGAACTGGAT
AAACTGCTTCAGAGACAACATCACCGTGAAATGCAACTATGTGGAGGCCC
ACAAGGGCCATAGAGGGCCACGAAATGGCAGACCAACTGGCCGCCGCCTA
GGATCCGCCTTGTATAAGCCAAACAATTGGTGCAAGCTTTCTAGACCATT
CGGTTGGCGCGCTGACCCAGGATAGATGGTCATATCCATGATCCATATAC
TAAGTCATAATCCAGCTAGCCTAGAA
FMO04276.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rnh1-RA | 1108 | CG8729-RA | 32..1019 | 31..1019 | 4620 | 98.1 | Plus |
| rnh1-RB | 1051 | CG8729-RB | 374..962 | 430..1019 | 2640 | 97 | Plus |
| rnh1-RB | 1051 | CG8729-RB | 32..373 | 31..372 | 1695 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7932008..7932349 | 372..31 | 1695 | 99.7 | Minus |
| 2R | 25286936 | 2R | 7931286..7931555 | 933..666 | 1240 | 98.1 | Minus |
| 2R | 25286936 | 2R | 7931611..7931846 | 665..430 | 1105 | 97.9 | Minus |
| 2R | 25286936 | 2R | 7931899..7931956 | 429..372 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:54:16 has no hits.
FMO04276.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:18 Download gff for
FMO04276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rnh1-RA | 28..1030 | 24..1031 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:43:02 Download gff for
FMO04276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rnh1-RA | 34..1036 | 24..1031 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:33:42 Download gff for
FMO04276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rnh1-RA | 28..1030 | 24..1031 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:33:42 Download gff for
FMO04276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7932008..7932355 | 23..372 | 98 | <- | Minus |
| 2R | 7931611..7931846 | 430..665 | 97 | <- | Minus |
| 2R | 7931899..7931955 | 373..429 | 100 | <- | Minus |
| 2R | 7931285..7931555 | 666..934 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:18 Download gff for
FMO04276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3818790..3819060 | 666..934 | 98 | <- | Minus |
| arm_2R | 3819116..3819351 | 430..665 | 97 | <- | Minus |
| arm_2R | 3819404..3819460 | 373..429 | 100 | <- | Minus |
| arm_2R | 3819513..3819860 | 23..372 | 98 | <- | Minus |
