FMO04277.5prime Sequence
1225 bp (1048 high quality bases) assembled on 2008-07-30
> FMO04277.5prime
GTATAGCATACATAAAACGAAGTTATCAGTCGACATGAAGATCCTGATGC
GAGCGGACACCCATGTGTCCTTCTCCGTGCCCGCCGATGGGCTCAAGGCC
AATTTTACCTTTTCCCAGGTCTTGGCTGCTCTGAGTGTCTCGCTGTGCTC
CTTGGTGGTCGGATTTGTCAGCGCTTACACGTCGCCTGCACTTGTGTCGA
TGACCGATCGAACCATCACCTCCTTTGAGGTCACAAAAGATGCTGGTTCC
TGGGTTGGTGGCATCATGCCACTGGCTGCATTAGCAGGTGGCATAACAGG
AGGACCCTTGATCGAATATCTGGGCAGGCGCAGCACCATCCTGGCCACTG
CGGTGCCCTTCATCGTATCATCACTGCTGATTGCGTGTGCTGTGAATGTG
ATCATGATTCTGTGCGGACGATTCCTAACTGGATTCTGCGTTGGCATTGC
CTCTTTATCCCTGCCCGTCTATCTGGGTGAGACTTTGCAGCCGGAAGTGC
GGGGCACTTTGGGTTTGCTGCCCACCGCTCTTGGTAACATAGGCATCCTG
GTTTGCTATGTGGCGGGATCCTTTATGAATTGGTCGATGCTGGCCTTCTT
GGGAGCTGCTCTGCCCGTTCCCTTCCTGATTTTGATGATCATTATCCCCG
AAACTCCGCGCTGGTTTGTGAACCGTGGTCAGGAAGAGCGCGCCAGGAAG
GCTTTGAAATGGCTGCGTGGCAAGGAGGCGGATGTGGAGCCCGAACTAAA
GGAGTTGATGCAATCTCAGGCCGATGCCGATCGTCAGGCCACTCAGAACA
CCTGTTTGGAGCTGTTTAAGCGAAACAATCTGAAGCCACTTTCCATTTCC
TTGGGTCTGATGTTCTTTCAACAGTTCAGCGGTATCAACGCGGTTATCTT
CTACACGGTCCAAATCTTCAAGGATGCGGGATCCACAATTGATAGCAATC
TTTCCACGATCATCGTGGGGTGTAGTTAACTTTTTTGCTACGTTTATGGG
CATCATTCTGATTGATCGGTGGGCAAAAAGATTCTTCTGTATGTATCGAA
ATTCGCAATGATCGTGAACCTGTTCAATTCTGGGCGGCTTCTTCAACTGC
AAGGCGCCATGTCGGATGTTTCCAATTGGGCGCTGCATTCACTGCTCGTA
CTACAATCGGGATTCCTGTCTCGAACCATTCCTGACTTAGAAGGGGTAAA
TCTGCGCGCCAAAATCTCAAGAAAC
FMO04277.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:59:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tret1-2-RA | 1695 | CG8234-RA | 113..1205 | 35..1127 | 5090 | 98.1 | Plus |
| Tret1-1-RB | 1980 | CG30035-RB | 160..1227 | 35..1103 | 3730 | 90.3 | Plus |
| Tret1-1-RA | 3132 | CG30035-RA | 1393..2379 | 116..1103 | 3430 | 90.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:59:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11676526..11677300 | 245..1020 | 3785 | 99.5 | Plus |
| 2R | 25286936 | 2R | 11673045..11673818 | 245..1019 | 2760 | 90.7 | Plus |
| 2R | 25286936 | 2R | 11676201..11676338 | 108..245 | 630 | 97.1 | Plus |
| 2R | 25286936 | 2R | 11672706..11672843 | 108..245 | 510 | 91.3 | Plus |
| 2R | 25286936 | 2R | 11676047..11676132 | 35..120 | 430 | 100 | Plus |
| 2R | 25286936 | 2R | 11672215..11672300 | 35..120 | 325 | 91.9 | Plus |
| 2R | 25286936 | 2R | 11677366..11677443 | 1029..1107 | 225 | 88.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:59:21 has no hits.
FMO04277.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:49 Download gff for
FMO04277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tret1-2-RA | 113..1205 | 35..1127 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:49:47 Download gff for
FMO04277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8234-RA | 88..1180 | 35..1127 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:31 Download gff for
FMO04277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tret1-2-RA | 113..1205 | 35..1127 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:31 Download gff for
FMO04277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11676034..11676130 | 26..118 | 93 | -> | Plus |
| 2R | 11676212..11676337 | 119..244 | 98 | -> | Plus |
| 2R | 11676526..11677311 | 245..1030 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:49 Download gff for
FMO04277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7563539..7563635 | 26..118 | 93 | -> | Plus |
| arm_2R | 7563717..7563842 | 119..244 | 98 | -> | Plus |
| arm_2R | 7564031..7564816 | 245..1030 | 99 | -> | Plus |
