FMO04278.5prime Sequence
1079 bp (1079 high quality bases) assembled on 2008-07-30
> FMO04278.5prime
TCGTATAGCATACATAATACGAAGTTATCAGTCGACATGCCTAAAGACTA
CTACAAGATACTGGGCATCCAGCGCACTGCCAATGATGGCGAAATCCGCA
AGGCATATCATAAGCAAGCGCTGCGCTACCATCCGGACAAAAACAAGAGC
CCTCAGGCGGAGGAGATCTTTAAGCAGGTGGCCAAGGCATATGAAGTCCT
ATCAGACAAAAAGAAGCGCGGATCGTACGACTCCCGCAATGACAAGGGTA
CCCGACGCAATACCGCGAATCAAGGTAGCGGTTTCGGCGATGGAACGGCA
TTTGGTAGCTGTGGTGGTGGCAGTGGCAGTGGCAGTGGCGGTGGCAGTGG
CGGTGGTCGCCAGAACAACCCGCGGGCCAACTTTGGACGTTTCTTCGACA
ACAGCGAATCATATTCTACGTTCTTCGAGGATATCGAAAACGATTTTGAC
AGCGACGATGACGTCCTGTTGGGTGGAGGAGCGGGCGCGCCTAAACGTCG
TTGCGAACAACAGTCACCCCAGTCAAGCATCGAACATGTAATATACGTTG
CTCTGGAGGACATTGCCAACGGGTGCAACAGGCGCATGAAGATCTCCCGG
GCTTCGGGTAGGAACGGCGTTGATGGGGTACAATATGACAGAATTCTCAC
TGTCAAGATACCTCCGGGCTGTAAGGCTGGCACCAAGATCTGCTTTCCCA
ATGAGGGTATTCAACTGCCCAACCTTGAGCCCGCCAACGTCGTGTTTATA
ATCCGGGACAAGCCACACCCAATCTTTCGCCGCGATGGCAACAATCTGCT
GTACACAGCCGAAATCTCGCTGAAGGATGCTCTGTGCGGTTTACACGTGA
TGGTGCCGACGCTTCTTGGCAGGCCGATGGAACTCAAGACCGACGTGGGC
GAGGTAATCAGTCCGAAATCCGTGCGCCGCATTCTGGGCTACGGATTGCC
CGATTCCATTAATAATTCCCGTCGCGGCTCCATCGTCGTCAGTTCTCATC
AGTTTCCAGACGCCATATCTAAGACTCGCATCCTCGCTCGAAGACTTCTG
CAAACGCAGCTTTCTAGAACATTCGTTTG
FMO04278.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:31:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2887-RA | 1234 | CG2887-RA | 70..1094 | 36..1054 | 4960 | 99.3 | Plus |
| DnaJ-1-RA | 1916 | CG10578-RA | 358..535 | 43..220 | 245 | 75.8 | Plus |
| DnaJ-1-RB | 2161 | CG10578-RB | 603..780 | 43..220 | 245 | 75.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:31:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10477400..10478424 | 1054..36 | 4835 | 99 | Minus |
| 3L | 28110227 | 3L | 5751410..5751587 | 220..43 | 245 | 75.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:31:22 has no hits.
FMO04278.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:43 Download gff for
FMO04278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2887-RA | 70..1094 | 36..1054 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:43:03 Download gff for
FMO04278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2887-RA | 70..1094 | 36..1054 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:13 Download gff for
FMO04278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2887-RA | 70..1094 | 36..1054 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:13 Download gff for
FMO04278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10477400..10478427 | 35..1054 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:43 Download gff for
FMO04278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10371433..10372460 | 35..1054 | 99 | <- | Minus |
