FMO04279.5prime Sequence
733 bp (733 high quality bases) assembled on 2008-07-30
> FMO04279.5prime
GTATAGCATACATAAAACGAAGTTATCAGTCGACATGAAATTTTTCGTTG
CACTCGCTCTCTTTGCGTGCCTCGGCTCTCTTGCCTTGGCCAAGGATGAT
GAATATTGCCAGAACACTGTAATCACCGCATGCTCTACGTCAGCCTTTTC
GGCCAACTCCATTTGTAATGCCCGTTTTGCTGGCATTGACCATATTGAGC
CCGAGATCCAGTCCTACATCAACGCCAACTTGGCCAAGTCGTACGACTAC
CTCCTGCTGGCCACCCACTTCAACTCCTACCAGAAGAACCGCCCCGGCTT
CCAGAAGCTGTACCAGGGACTCTCGGACCGCTCCTTCGAGGACAGCATTG
CCCTGATCAAGCAGGTGACCCGTCGCGGAGGAATCGTTGACTTCAACACC
CGCCACGAGTCTTCCGGCTCCGTGAGCACCAAGCGCGGCACTCTTGAGGT
CGACGAACTGCACTCCCTGGCTCTGGCTCTGGACACCGAGAAGCAGCTGG
CCACCGGAGCCACTCACGTGCACTCCCGTGCCACCCACGCCACCGACGCC
GAGAGGGATCCCGAGCTGGCCCACTACTTCGAGGAGAACTTCCTGGGCAA
GCAGGCCGAGAGCGTGCGCAAGCTGTCCGGTTATGCCAACGACCTCGCCA
AGCTGATGAAGGTCCCCGACCCATCCCTGTCCGTCTACCTGTTCGACGAG
TATCTGCAGAAGCAGGCAAGCTTTCTAGACCAT
FMO04279.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer2LCH-RD | 1091 | CG1469-RD | 80..766 | 29..715 | 3420 | 99.9 | Plus |
| Fer2LCH-RC | 1078 | CG1469-RC | 67..753 | 29..715 | 3420 | 99.9 | Plus |
| Fer2LCH-RB | 1443 | CG1469-RB | 432..1118 | 29..715 | 3420 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30389696..30390259 | 152..715 | 2805 | 99.8 | Plus |
| 3R | 32079331 | 3R | 30389205..30389328 | 29..152 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:09:58 has no hits.
FMO04279.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:57:23 Download gff for
FMO04279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer2LCH-RB | 423..1122 | 19..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:43:05 Download gff for
FMO04279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer2LCH-RC | 57..757 | 17..720 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:43:50 Download gff for
FMO04279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer2LCH-RB | 423..1122 | 19..720 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:43:50 Download gff for
FMO04279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30389199..30389328 | 24..152 | 97 | -> | Plus |
| 3R | 30389697..30390263 | 153..720 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:57:23 Download gff for
FMO04279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26214921..26215050 | 24..152 | 97 | -> | Plus |
| arm_3R | 26215419..26215985 | 153..720 | 99 | | Plus |
