FMO04280.5prime Sequence
1200 bp (909 high quality bases) assembled on 2008-07-30
> FMO04280.5prime
GTATAGCATACATAAAACGAAGTTATCAGTCGACATGGACAAGATTGTCT
TTCTGCCAACGTCCATGTTGCCCATGGGCTTCGAAGCTGGCGGTGTTTTT
GGGCCGGGTATCCTTACGCGTCGTTCCTATCCCATTGACTTGAAGGCCGC
GGGTCACAAGGGTCAAACGCCGCCGCTGTTTGTCGGTTTGCGCATGGAAG
TCCAACCGCCGACAAGGGTCGAGAGTCTCCTAAAAAAAGACGGTGAGTCC
CAACCAATTCAGGACACATTGATGAATTGGTTGCATGCCAACAATGATCT
TATAAATGGGGCACAGCCAAAAGGACAAGAGCTTCGTGATGAATTTTCGC
TATCGATGGTCTTCAATTTGCCAATACCACCGAGTCCACCATCGCCCTAT
TCATATGGCCGTATCCCGTTGCAGTGCAACATTTATACGCCGGATCTGTC
CAATGTTCTGTTGCTTATGTCGCACCAACGCGATCTTACGGTGGCGATAC
TGTCCACCGTTAACAATCCGCATGTTCCATCTGTGGCATTCGCCACCATG
AGCGATGATGCGGAGTGCCCCAAGTTCGAGCTGCCCATCGGAGTCTTTCC
CATTTGTGAGGGCGTCAATCGACCAATTTTTCTGCCCAAACGTTTCATGC
ACAAAGGATTCGAAGCCGGTTGCGTCATCAAGCCGGGAACTCTATCCGAA
CTGTGGTTCATGGACTACATCGGACGTTTCGGTCCACCACAGCCACAGTA
TAATGGTTCCATCACACCACCGCTATTCGTTGGCAAGATTTGTCGCGAAG
AGCCGGCCGTCGATATGATAAAGAAAATTCAATTTGAGATCGAAAAGAAA
GCCTGCGATGATGCTGAGTCAAAGGCAACGCTAGCAGTGTCAAACCTAAA
TTTGATAATTCCATCACCTACGGCTTTATGGTAATGCAAACGAATGAGCC
GAGTCACAAAAGGGGGCATACAGTGTGCAAAACTACGACGAGCCTTTGAT
GATGATGCATGTGAGGTGTTTAAGAAACCGGCCACTGCTGAAAAGCCTCA
GATACTCGAGAAAGATGAATGTGTACGTGGGCGATCAGTCGCCAGAATGA
TAAATGCTCACTGAGCTGATCAAACATCCTATCGGCCTTCAGTTGAATGC
AATGAAATATGCATGCCATGTCGTTTGGCAATTCCCAATATGAAGACCGT
FMO04280.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15333-RA | 1823 | CG15333-RA | 313..1442 | 35..1146 | 4935 | 96.7 | Plus |
| CG15332-RA | 2003 | CG15332-RA | 833..1160 | 384..711 | 890 | 85.1 | Plus |
| CG15332-RA | 2003 | CG15332-RA | 490..643 | 41..194 | 265 | 78.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8019997..8021033 | 1064..35 | 4640 | 98.1 | Minus |
| X | 23542271 | X | 7954695..7955022 | 711..384 | 890 | 84.8 | Minus |
| X | 23542271 | X | 7955212..7955365 | 194..41 | 260 | 77.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:14:53 has no hits.
FMO04280.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:15:16 Download gff for
FMO04280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15333-RA | 309..1428 | 30..1134 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:50:42 Download gff for
FMO04280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15333-RA | 228..1347 | 30..1134 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:26 Download gff for
FMO04280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15333-RA | 309..1428 | 30..1134 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:26 Download gff for
FMO04280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8019965..8021037 | 30..1092 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:15:16 Download gff for
FMO04280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7913998..7915070 | 30..1092 | 97 | | Minus |
