FMO04286.5prime Sequence
925 bp (925 high quality bases) assembled on 2008-07-30
> FMO04286.5prime
CATACATAAAACGAAGTTATCAGTCGACATGCATTGCCTGCTTCAACTGA
GTCTGGCTGTGGCCCTTTGCGCCCTCTTAGCCCCATCCACTACCTTGGCC
GAACGCCGCAATGTGTACCGCCTGGGTGGACGCGCCTCCGACGCTCAGAT
GGAGGCCCGCTTCACATCGTCGATTGCCAACAAGCTGACCTCGCTGAAGG
GCACCACCACGACGACCACGGTTGCCCCCACTACCACCACCACGCCCACC
TCCACTACGGAGACGACCACGCCGACTGCACCAACAACGTCCACTGGCAC
CTCGACGAGCACCACCACGCCCACAACCTCCGACACCACCACCGGTCGTG
CCTTCCCCGCAATTCAAGACGATGTTGAGGAAGATGATGAGGAGATGCCC
AGGGCGTTTGAAGATGAAGAAGACGAAGGTGACGACAGCCTGGAGGACGA
AGATGATGACGACGATGAGGAGAGCTACTTTGTGGCCGCTCCTTCCGCCG
GTGGCAATAGCAATGCCGTGCAGCAGTCCTCAGAGTCCGGCTCGTTGGTC
CGCCCCTCGGAACTCCAGTGGCGCCAGTTCCAGCAGGAACAGCGCAACCG
TCGCCGAATCCAGCGCCTCCAGCGTGAGCACAACCAGCGGATCAGGTCCC
TCCTTCGCCGCCAGAGGGCCGCCGAGAAGCGAAGCCAGCAACGCTTGCGC
CGCCAGCGCCAACAGAGCCGTAAGCGCGTCTCACAGCGCCAGCGCCGCAA
CAGGAACCGTTCCAAGGCCCAGCGCCAGCGCCAGAGGAGGAACAACATGA
ACCGTCGTCGCCGCCAGCAGCAGCAGCGCCAGCGCAGACACCGCCAGCAG
CAGCGTCGCCGGCTCGTGCGCCTCATGCGCCGTCGTCGTCGTGGCGGACG
TCGCAACGCAAGCTTTCTAGACCAT
FMO04286.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14420-RA | 1570 | CG14420-RA | 628..1506 | 29..907 | 4275 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2939654..2940463 | 98..907 | 3930 | 99 | Plus |
| X | 23542271 | X | 2939483..2939552 | 29..98 | 350 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:28:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 567..596 | 436..465 | 114 | 86.7 | Plus |
| Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 4768..4814 | 383..426 | 111 | 74.5 | Plus |
| aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 2637..2683 | 383..426 | 111 | 74.5 | Plus |
FMO04286.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:25:08 Download gff for
FMO04286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14420-RA | 619..1510 | 19..912 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:48:29 Download gff for
FMO04286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14420-RA | 619..1510 | 19..912 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:13:20 Download gff for
FMO04286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14420-RA | 619..1510 | 19..912 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:13:20 Download gff for
FMO04286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2939469..2939552 | 18..98 | 91 | -> | Plus |
| X | 2939655..2940467 | 99..912 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:25:08 Download gff for
FMO04286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2833502..2833585 | 18..98 | 91 | -> | Plus |
| arm_X | 2833688..2834500 | 99..912 | 98 | | Plus |
