FMO04288.5prime Sequence
1216 bp (972 high quality bases) assembled on 2008-07-30
> FMO04288.5prime
TATAGCATAATAAAACGAAGTTATCAGTCGACATGTTCTCAGGACTTATA
CCCATGATGCAGCAGACTCGGAGGGCCACGGTTCCACTAGGTGGGGACAG
CCGAAGTGGCAACACCGAGTCCCAAATTGGATCCAGTAAATCTTCTAATT
GCAGATTGCACCTAATTTCGCGAACCGGAAAGCTTCTTCTGGACTACAAG
CAATACAAGGCAGCCCGAACTATCCAAAACAACTGGCGGAAATTCTATTT
TCGAAAGTATTTCAAGGATCTAAGAAAGGCGGTCATCACGATTCAGCGCT
GGTGGCGCGGATTCTCGGTCCGAAAAAACCACTTCAGGTATGTGGAGAAC
CTGCTGCAGAAGCGGGTTCAGGATCACCACCATCGGGCGGCCACCAAGAT
CCAGGCCCTATTCCGAGGATGGAAGAGCCGGCGCACCATTCACGATCACA
GCAAATTGCTCAGGAAGCAGGTGTGCGCCGCCGAGGATCTGCTCAATTGC
GTGGCCTTCAAGCTGCACCACCTGCTCCGCACCTTCGCGATTCCAGGTGT
ATATTCGCTCAAGAACTCAAACTGCATGTCGCGAGTAGAGAAGCTGCTGG
CCAGCTTGCATTTTCGCTTCCACAATGGAAGGGTTAAGACGCAACTGGCT
AAAGAACTGGCCGATCGAGGAAAGGATACGGAAACTTTCAAGAGGAGCAA
CAAGTTCAGCAAAGTCCCATTCGAAGGAGCCCGCTATTGGAGCCAATGCA
AGCCAAAGTGCGAGGCCGCCCTGAAAATGTCCAAGAATATTGAAAGGCGC
ATGTACAGAATCATCGAGATTTACGATGCTTCACAGAGAGAAGCCCATGC
GGCGTTGGTCGAAAAGAATAGGGCGTACAGAAAGCACAACGGGGCTTATG
CAGAACATCAAGAAATCGGCGGAGACGAGTAAACGCGACTTCTGCGGCGA
TGTCATCGCCAGTATGAAACGCTGGAAATCCTGATGGACAACGATTTGAC
TGTGACAAGAAACATATTCCAAAACCCGCAAATTTGGAGAGGTCGTGCTG
AAATATTCGCATATGCAATGGATCGAAGAACTGACTGACTAATGCGCAAT
CCCGATTCACGAAATCTATTTGCGGTCAGCTTCTAGAACATCCGTTTGGG
CGCGGGACAGGTAATGCCATAGCATTCTGATGCCTAAACTCAACCACAAC
TAGGCCTGAGGAATAC
FMO04288.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:16:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13544-RA | 1262 | CG13544-RA | 100..1195 | 33..1120 | 4860 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:16:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23139820..23140219 | 571..172 | 1970 | 99.5 | Minus |
| 2R | 25286936 | 2R | 23139452..23139765 | 885..572 | 1525 | 99 | Minus |
| 2R | 25286936 | 2R | 23139243..23139395 | 1032..880 | 520 | 92.2 | Minus |
| 2R | 25286936 | 2R | 23140408..23140478 | 103..33 | 355 | 100 | Minus |
| 2R | 25286936 | 2R | 23140284..23140353 | 172..103 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:16:12 has no hits.
FMO04288.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:01:49 Download gff for
FMO04288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13544-RA | 95..1138 | 24..1068 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:50:46 Download gff for
FMO04288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13544-RA | 102..1145 | 24..1068 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:47:20 Download gff for
FMO04288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13544-RA | 95..1138 | 24..1068 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:47:20 Download gff for
FMO04288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23139204..23139395 | 880..1068 | 92 | <- | Minus |
| 2R | 23139458..23139765 | 572..879 | 99 | <- | Minus |
| 2R | 23139820..23140218 | 173..571 | 99 | <- | Minus |
| 2R | 23140284..23140352 | 104..172 | 100 | <- | Minus |
| 2R | 23140408..23140479 | 27..103 | 93 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:01:49 Download gff for
FMO04288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19026727..19026918 | 880..1068 | 92 | <- | Minus |
| arm_2R | 19026981..19027288 | 572..879 | 99 | <- | Minus |
| arm_2R | 19027343..19027741 | 173..571 | 99 | <- | Minus |
| arm_2R | 19027807..19027875 | 104..172 | 100 | <- | Minus |
| arm_2R | 19027931..19028002 | 27..103 | 93 | <- | Minus |
