FMO04289.5prime Sequence
440 bp (322 high quality bases) assembled on 2008-07-30
> FMO04289.5prime
ACATAAAAAGGAAGTTATCAATCCACATGGATGCCGCCGAGGGTCAAAGC
TTGGTGATCAAAATGGCACAAAAGAACAAGGAGACCCAGACTGTGAAGCT
GGTGCCCGGAGGCGGTCTGGTCAACAACTGGTTTGCCCCGGCTACGTATG
GGCCACCAGGGATTCCATTTGGGGCTAGTCCCATGATCCCCCCGCCGCCC
GTTCCGAATCACAGCGTATCGTGCCAGTTTTACATGGACCGGGAGGAGCA
CCTGTACCGCCGCGCCTGCCTTATGAAGGGCATCCGGGTGGAGCGGGTCT
CTGATATCCGCGAGGAGGAGGACGACTCAAACGGCTCCGAGGAGGACCCT
TCGAAGGGCATCCGCTACCGCTACACCCTGGACGAGATGAAAAGCTTCAA
CCCATACCGTTTTATCAACTTTGCAAGCTTTCTAGACCAT
FMO04289.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1690-RB | 1708 | CG1690-RB | 200..595 | 27..422 | 1845 | 97.7 | Plus |
| CG1690-RA | 1073 | CG1690-RA | 200..595 | 27..422 | 1845 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9757406..9757747 | 422..81 | 1590 | 97.7 | Minus |
| 2R | 25286936 | 2R | 9757815..9757869 | 81..27 | 260 | 98.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:50:02 has no hits.
FMO04289.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:49 Download gff for
FMO04289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1690-RA | 190..603 | 18..430 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:45:33 Download gff for
FMO04289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1690-RA | 190..603 | 18..430 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:33 Download gff for
FMO04289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1690-RA | 190..603 | 18..430 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:33 Download gff for
FMO04289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9757398..9757746 | 82..430 | 96 | <- | Minus |
| 2R | 9757815..9757879 | 18..81 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:49 Download gff for
FMO04289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5644903..5645251 | 82..430 | 96 | <- | Minus |
| arm_2R | 5645320..5645384 | 18..81 | 93 | | Minus |
