FMO04293.5prime Sequence
771 bp (771 high quality bases) assembled on 2008-07-30
> FMO04293.5prime
AAAACGAAGTTATCAGTCGACATGTATCACTACCAGCAAGGCGATGAAAC
TGGCGCATACACAGATGCGGAAGCGGACAATAGCTTCGCCTTCGATGACC
AGAGCATCCGGAAGGGATTTATTCGAAAGGTCTACTTGATATTGATGTGC
CAATTGCTGATCACTTTCGGTTTTGTTAGCGTATTTACGTTCTCGAAAGC
TTCTCAGGAATGGGTGCAAAAAAATCCGGCACTGTTTTGGATAGCCTTGG
ACGTTCTTATCGTGACCATGATCTGTATGGCCTGCTGCGAAAGTGTACGC
CGTAAGACGCCTCTTAACTTCATCTTTCTTTTCCTGTTCACCGTGGCGGA
GTCGTTCCTTCTGGGTATGGTCGCCGGACAGTTTGAGGCTGATGAGGTCC
TGATGGCAGAGGGAATTACGGCCGCGGTGGCCCTGGGACTCACCCTGTTT
GCCCTGCAGACCAAATACGATTTTACGATGTGCGGAGGAGTGTTGGTGGC
CTGTCTGGTGGTCTTCATCATTTTTGGCATAATCGCTATCTTCATCCCAG
GCAAGGTGATCGGACTGGTCTATGCCTCCTTGGGAGCATTGCTCTTCTCC
GTTTACTTGGTGTACGATACCCAGTTGATGCTGGATGGTAATCATAAATA
CTCCATCAGTCCTGAGGAATACATCTTCGCCGCTCTAAACCTCTACCTGG
ACATTATTAACATCTTCATGTACATACTGACCATTATCGGATTGTCTCGC
AATGCAAGCTTTCTAGACCAT
FMO04293.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3814-RB | 1020 | CG3814-RB | 177..908 | 22..753 | 3525 | 98.8 | Plus |
| CG3814-RC | 1011 | CG3814-RC | 185..899 | 39..753 | 3440 | 98.7 | Plus |
| CG3814-RD | 933 | CG3814-RD | 132..821 | 64..753 | 3315 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12875276..12875777 | 753..252 | 2420 | 98.8 | Minus |
| 2R | 25286936 | 2R | 12876101..12876209 | 147..39 | 530 | 99.1 | Minus |
| 2R | 25286936 | 2R | 12875841..12875944 | 250..147 | 505 | 99 | Minus |
| 2R | 25286936 | 2R | 12877671..12877960 | 740..451 | 385 | 75.5 | Minus |
| 3R | 32079331 | 3R | 14152993..14153147 | 725..571 | 265 | 78.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:12:35 has no hits.
FMO04293.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:59:09 Download gff for
FMO04293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3814-RB | 177..908 | 22..753 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:43:06 Download gff for
FMO04293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3814-RB | 177..908 | 22..753 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:18 Download gff for
FMO04293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3814-RB | 177..908 | 22..753 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:18 Download gff for
FMO04293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12875276..12875779 | 250..753 | 98 | <- | Minus |
| 2R | 12875842..12875943 | 148..249 | 99 | <- | Minus |
| 2R | 12876101..12876207 | 41..147 | 99 | <- | Minus |
| 2R | 12876772..12876790 | 22..40 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:59:09 Download gff for
FMO04293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8762781..8763284 | 250..753 | 98 | <- | Minus |
| arm_2R | 8763347..8763448 | 148..249 | 99 | <- | Minus |
| arm_2R | 8763606..8763712 | 41..147 | 99 | <- | Minus |
| arm_2R | 8764277..8764295 | 22..40 | 100 | | Minus |
