FMO04309.5prime Sequence
828 bp (828 high quality bases) assembled on 2008-07-30
> FMO04309.5prime
ACATAATAAGGAAGTTATCAGTCGACATGGAGATAGCACGAATCGCATTT
CTACTTTTCTTCCTGTTCTCAGATCATTCTGCGGGCCACAAGTTGCCGCA
GTCCTCCAATGAGATAGCTGCTCTAATGTCGGATCATCATGGTGATGGCG
ACAACAGTGTGTCGTCATCCTCCGGCGGTGCCCCGTGCGACTTCAAGATG
AATGGAAAGACCAGGGTAAAGGCCTCATGCATTGCGCAGAAGGCGGCCAA
GGAAGCCATGGAGGCATCCGATGCCCAGATAGAGGCTGGCGAGGCAGCTG
CCCGCCAGGTGAAGCAGCAACTGGCCGACAAAGCGCTGGCCGCAGCCAAG
GCGGCAGAAGCTGCTCTGGCCGGCAAGCAACAGATTGTCGAGCAACTGGA
GTCCGAGGTGCGCGAGGGGGAGCTAGTGGTCCAGGAGGAGAGCACCTTGT
TACAGACCACCCAAACTACTTATGCTGCGGCCGGGCAAGCGGCCAAACAG
GCGGCAGATCAGCTGAACACCATTACGCTGGCGGTGAAGAATGCGCAGGA
TAATGTGGTCAACTCGGAGCACGTGGCCAGTGGCGCTCAGCAGGAGCTGG
GCGAGAAGCAACAGCTTGTGGAAGCGGCCAAGAAGCGGGTGGAGCTATTG
CTCCGCCAGCTGGAGGTGGCCCGTGTGGATTTCAAGAATACCAAAAACGC
CGCCGAGAAGGCAGCCTGTGCTGCCCAGGAGGCCAGGCATAGGGCCACCA
GGGAGCGCAGGAGGGCGGAACTGAGGCACTTACTCTGGCTGAAGAGGGGG
CGCACCAACGCAAAGCTTTCTAGACCAT
FMO04309.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11694-RA | 935 | CG11694-RA | 69..852 | 26..809 | 3920 | 100 | Plus |
| CG14354-RA | 1041 | CG14354-RA | 281..489 | 231..439 | 250 | 74.6 | Plus |
| CG14840-RA | 1006 | CG14840-RA | 637..714 | 567..644 | 195 | 83.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8311286..8312069 | 809..26 | 3920 | 100 | Minus |
| 3R | 32079331 | 3R | 25815759..25815967 | 231..439 | 250 | 74.6 | Plus |
| 3R | 32079331 | 3R | 14260500..14260577 | 644..567 | 195 | 83.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:22:10 has no hits.
FMO04309.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:33 Download gff for
FMO04309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11694-RA | 62..858 | 20..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:29:13 Download gff for
FMO04309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11694-RA | 10..806 | 20..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:33 Download gff for
FMO04309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11694-RA | 62..858 | 20..816 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:33 Download gff for
FMO04309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8311280..8312086 | 13..816 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:33 Download gff for
FMO04309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4137002..4137808 | 13..816 | 98 | -> | Minus |
