FMO04311.5prime Sequence
542 bp (542 high quality bases) assembled on 2008-07-30
> FMO04311.5prime
AGAGACCGCCGCCAAGGAGGCGGAAACTGGCTCCCTTCAAAAAGGAGAAG
AAAGAAAAGTCGGCCGAGGGCACTAAGCCGAGGCCGGCAAGCAGCCAGCG
CGGATCGCTGACCAAGTCCCATATGGGCGTTTCCTTGCCGATGGGTGCTC
CGGCAGCCAAGCCCACCATGCGGTTCATGCCCACCTACCGCCTGGAGTCC
AAGAATCCGCTCAACAAGGAACGCGTGGAGAACATCATAAAGGCGGTGAT
GAACCGACACTACAACGATGAGTACATGTTCCATCCCAAGCATTCCCTCC
ACATGGCCGCGCAAGTGAGCGAGGAAATCAAGAACCGCATCAAACTCGAC
AACTACGACAGATATCGCTACATAGTGCTGGTCACTGTGGGCGAGTTCCT
GATGCAGGGCCTCTACTCCATGGTCAACTTCCTGTGGGATGCTGAAAAAG
ACGGATTTGTGACCTACAGCGTGGAGAGACCCTCGTACTTTGCAGTCTGC
ACCACCTTTTACCTGTACTACGATGCAAGCTTTCTAGACCAT
FMO04311.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14763-RC | 906 | CG14763-RC | 61..583 | 1..524 | 2520 | 98.9 | Plus |
| CG14763-RB | 690 | CG14763-RB | 61..583 | 1..524 | 2520 | 98.9 | Plus |
| CG14763-RA | 647 | CG14763-RA | 61..583 | 1..524 | 2520 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7967059..7967264 | 361..156 | 1015 | 99.5 | Minus |
| 2R | 25286936 | 2R | 7966842..7967007 | 524..359 | 830 | 100 | Minus |
| 2R | 25286936 | 2R | 7967319..7967400 | 161..80 | 410 | 100 | Minus |
| 2R | 25286936 | 2R | 7967886..7967964 | 80..1 | 275 | 92.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:56:07 has no hits.
FMO04311.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:47 Download gff for
FMO04311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14763-RA | 61..587 | 1..529 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:46:54 Download gff for
FMO04311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14763-RA | 61..587 | 1..529 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:58 Download gff for
FMO04311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14763-RA | 61..587 | 1..529 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:58 Download gff for
FMO04311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7967319..7967399 | 81..161 | 100 | <- | Minus |
| 2R | 7967886..7967964 | 1..80 | 92 | | Minus |
| 2R | 7966838..7967004 | 362..529 | 98 | <- | Minus |
| 2R | 7967059..7967258 | 162..361 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:47 Download gff for
FMO04311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3854343..3854509 | 362..529 | 98 | <- | Minus |
| arm_2R | 3854564..3854763 | 162..361 | 100 | <- | Minus |
| arm_2R | 3854824..3854904 | 81..161 | 100 | <- | Minus |
| arm_2R | 3855391..3855469 | 1..80 | 92 | | Minus |
