FMO04312.5prime Sequence
819 bp (738 high quality bases) assembled on 2008-07-30
> FMO04312.5prime
ATTAAAAAAAGAAGTTATCAGTCGACATGAATAAAACCTTTGCCCGTTGC
CAAAAGGTGGTTTACCCCATCGAGGAGCTTAAGTGTCTGGACAAAACATG
GCCCCCCCGTGTTTCAAATGCACAGAATGCGGCATGACGCTCAATATGAA
AACCTACAAGGGCTACAACAAAATGCCCTACTGCGAGGCACACATCCCGA
AGGCGAAGGCAACGGCCATTGCCGATACGCCCGAATTGAAGCGCATCGCG
GAGAACACCAAAATCCAGTCCAACGTCAAGTACCACGCGGACTTTGAGAA
GGCCAAGGGCAAATTTACACAGGTGGCCGATGACCCGGAAACGCTGCGTA
TCAAACAGAACACGAAGCACATATCGAATGTGGCATATCACGGGGATCTG
GAGAAGAAGGCGGCCATGGAGAAGCAGCGAGGATCCGCCGAGGTCTCCGA
CAGCAGCACAACATCCCAGCAGCAACAGATGCCGCCACCACAGTCGCCGG
CGAATCCGCAGCAGCAGGCGCTCAACAGCTACAACGAGATGCGCTCGGCC
ATACTCCAGAACTCGCATCATCCCAGCGGCAATTCCGTGGATCAGTACGA
CCAGCCACAGCAGCAGCAACATCAGCCGCAACAGCAGAGCACCAACCCCA
CGCTGGTGGCTGCCCAACAGCAGCAATCCCATCATAGCCTACTGAACAAC
AATGCCAGCAACGGCGGCATTTCGCACAGCCACCACAGCACATCAATAAT
AATGTGACACGGCTCACAGAACCAAATGTTGCCGCCCACAAATGAGACGC
TCGGCGGCCAGATGTCTCG
FMO04312.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:05:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lasp-RA | 2793 | CG3849-RA | 667..1451 | 27..811 | 3760 | 98.9 | Plus |
| Lasp-RD | 2127 | CG3849-RD | 667..1105 | 27..463 | 2070 | 98.4 | Plus |
| Lasp-RC | 3189 | CG3849-RC | 667..1100 | 27..459 | 2070 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:05:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16679122..16679473 | 811..459 | 1620 | 99.2 | Minus |
| 3L | 28110227 | 3L | 16680812..16680951 | 458..319 | 700 | 100 | Minus |
| 3L | 28110227 | 3L | 16681236..16681370 | 324..190 | 675 | 100 | Minus |
| 3L | 28110227 | 3L | 16694202..16694283 | 189..108 | 410 | 100 | Minus |
| 3L | 28110227 | 3L | 16710943..16711011 | 95..27 | 330 | 98.6 | Minus |
Blast to na_te.dros performed 2014-11-28 22:05:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6994 | 509..775 | 211 | 57.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6897 | 570..751 | 204 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6925 | 589..741 | 202 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6916 | 481..676 | 197 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2450 | 604..752 | 194 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6911 | 600..785 | 190 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2291..2548 | 409..653 | 186 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2361..2542 | 557..748 | 173 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6861 | 607..751 | 172 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6953 | 504..747 | 171 | 58.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2436..2644 | 448..650 | 164 | 59.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1093..1151 | 589..646 | 157 | 76.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1057..1143 | 598..684 | 155 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2494 | 591..751 | 149 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2634..2951 | 451..775 | 149 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2844..2989 | 608..748 | 149 | 61.5 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 970..1007 | 600..637 | 136 | 84.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1540..1600 | 591..651 | 134 | 68.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1110..1152 | 594..636 | 134 | 79.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2478..2662 | 451..636 | 133 | 58.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1117..1167 | 589..639 | 120 | 70.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6532..6564 | 604..636 | 111 | 81.8 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3286..3437 | 600..752 | 110 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1515..1576 | 587..650 | 108 | 65.6 | Plus |
FMO04312.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:37 Download gff for
FMO04312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lasp-RA | 667..1459 | 27..819 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:28:58 Download gff for
FMO04312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lasp-RA | 642..1434 | 27..819 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:25 Download gff for
FMO04312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lasp-RA | 667..1459 | 27..819 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:25 Download gff for
FMO04312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16710943..16711018 | 23..95 | 93 | <- | Minus |
| 3L | 16680812..16680947 | 323..458 | 100 | <- | Minus |
| 3L | 16681238..16681370 | 190..322 | 100 | <- | Minus |
| 3L | 16694202..16694296 | 96..189 | 94 | <- | Minus |
| 3L | 16679114..16679473 | 459..819 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:37 Download gff for
FMO04312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16673912..16674047 | 323..458 | 100 | <- | Minus |
| arm_3L | 16674338..16674470 | 190..322 | 100 | <- | Minus |
| arm_3L | 16687302..16687396 | 96..189 | 94 | <- | Minus |
| arm_3L | 16704043..16704118 | 23..95 | 93 | <- | Minus |
| arm_3L | 16672214..16672573 | 459..819 | 98 | <- | Minus |
