FMO04313.5prime Sequence
638 bp (638 high quality bases) assembled on 2008-07-30
> FMO04313.5prime
GCATACATAAAACGAAGTTATCAGTCGACATGGCAGCATCGCAGGTTGAC
CAGAAACGAGCACTTAACAAATTAAAGCACGACTTGGAGCCTTTCCGGAC
AGCCATCGTGGGAGCGTACGGCGTGCTAACCTGGGAGAAGCAGTACTACG
CCGGAGTGGTGTTTGGCGTCATCAGCTGCCTGTACCTGGTGCTGTGGTAC
CTGGACTTGTCGCTGATTACCCTGCTGTCGCTGCTCGGTGTCATTAGCAT
TTTGCTGAACTACGCATTCCCCATGGTGTCGCGCCTGATCTTTGGCGGAG
TCAACTGGGATGGCGACCAGGAGGCCAAGTTCGAGGACGTGTGCGGCCAG
GTGTGCGCCGTCAAGGGCAGCCTGGTGGTCTGGTACGAGTACCTCTTCAA
CGAGCGGAAGTCCACAGTGTTTGTAATCGTCATGAGTTTGGGTCTTTTGG
CTATGGCCTGGATTGGAGCCATCATTAACAATCTACTGCTTATGTACTTG
GCCACCCTACTCATCCTCATGTGGCCAGGACTACAGAACAAGGACATTTT
TAAGGCCATCACCCAAAGGGCCTCGAAGATTATTAACGAGAAGATCCAGT
GCGGCAAAAGGAAGCTGCAGGCAAGCTTTCTAGACCAT
FMO04313.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10326-RB | 1178 | CG10326-RB | 164..755 | 29..620 | 2960 | 100 | Plus |
| CG10326-RA | 1294 | CG10326-RA | 280..871 | 29..620 | 2960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16644014..16644383 | 50..419 | 1850 | 100 | Plus |
| 3R | 32079331 | 3R | 16644547..16644748 | 419..620 | 1010 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:06:55 has no hits.
FMO04313.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:40 Download gff for
FMO04313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10326-RA | 274..876 | 23..625 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:49:33 Download gff for
FMO04313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10326-RA | 274..876 | 23..625 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:06 Download gff for
FMO04313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10326-RA | 274..876 | 23..625 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:06 Download gff for
FMO04313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16644018..16644383 | 54..419 | 100 | -> | Plus |
| 3R | 16644548..16644753 | 420..625 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:40 Download gff for
FMO04313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12469740..12470105 | 54..419 | 100 | -> | Plus |
| arm_3R | 12470270..12470475 | 420..625 | 99 | | Plus |
