FMO04315.5prime Sequence
500 bp (500 high quality bases) assembled on 2008-07-30
> FMO04315.5prime
CGTATAGCATACATAAAACAAAGTTATCAGTCGACATGGTGGAGCAACAA
AAAAAGCGCTTGGAGGGCGCCATTAGCGAAATGATCGAGGACATGTACCG
CACCCACTTGCGCAGAATGCAGTCCACGATGCACCGCTGTGCCGCCCGCT
GCTGCGACGATGATCGAGGGACGCTGGAGAGCGTACAGAACTGCATCGAG
AAGTGCGCCGGTCCCCTGATGGATGCCCAGGATTTCCTGCAGCACGAGCT
GGGCCAATTCCAGAATAGACTTCAAAACTGCGTTAGGGATTGCAACAGCG
ATGCGCGGTCTCAGATGCCCAGCAATCCGAGTGACCGGGACATGTCCCGA
TCCCAGCACATGTTTGAGAGTTGCACGAACAACTGTGTGGACAAGTACAT
AAACCTGATACCTGGTCTGCTCAAGTCGATCAAACAAACATTGGACAGGG
GTCCGCCGAAAAGATCACGCAACATGGATGTCGCAAGCTTTCTAGACCAT
FMO04315.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5327-RA | 2136 | CG5327-RA | 64..510 | 36..482 | 2205 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18616440..18616635 | 287..482 | 950 | 99 | Plus |
| 2R | 25286936 | 2R | 18616195..18616362 | 121..288 | 840 | 100 | Plus |
| 2R | 25286936 | 2R | 18616051..18616137 | 36..122 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:52:21 has no hits.
FMO04315.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:41 Download gff for
FMO04315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5327-RA | 52..513 | 24..486 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:49:34 Download gff for
FMO04315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5327-RA | 52..513 | 24..486 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:37 Download gff for
FMO04315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5327-RA | 52..513 | 24..486 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:37 Download gff for
FMO04315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18616042..18616137 | 27..122 | 95 | -> | Plus |
| 2R | 18616197..18616361 | 123..287 | 100 | -> | Plus |
| 2R | 18616441..18616638 | 288..486 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:41 Download gff for
FMO04315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14503547..14503642 | 27..122 | 95 | -> | Plus |
| arm_2R | 14503702..14503866 | 123..287 | 100 | -> | Plus |
| arm_2R | 14503946..14504143 | 288..486 | 97 | | Plus |
