FMO04317.5prime Sequence
1078 bp (1008 high quality bases) assembled on 2008-07-30
> FMO04317.5prime
ATAGCATACATAAAAAAAAGTTATCAGTCGACATGAGCCCTCTCCCACGA
GTCAACATCGACGAGCCGAAATATGATCAGAACTCCTACTTGGGCAGAGC
CAAGCACTTCTTCCTGCTGACCAACCCGCTTAATGTGCTGGCCTCCGCCT
CGAAGTTGGAGGAGGCCCGCCAGATTGTGATAAAGTACCGGGCTGGCAAG
GATGTTCCCGAGTGCAAGACCATCGACGACGTGTGGCGCGCTAAGTACCT
GTACGATTCGGCGTTCCATCCAGAGACCGGGGAGAAGCAGATAGTCATCG
GGCGCATGGCTGCGCAGATGCCCATGAACACAATCATCACCGGCGGCATG
ATGGCCTTCTACAAAAGCACTCCCGCCGTCGTCTTCTGGCAGTGGTTCAA
TCAGACATTCAACGCCATTGTTAACTACACGAACCGTTCGGGAACCTCGC
CCATCAGCCAGCAGCAACTAGTTACCTCGTACTGTTTGGCCACTAGCGGA
GCCCTGGTCACGGCCCTTTCCCTGAACCACGCAGTGAAGAACATGAATCC
GCTCTTGGGTCGCCTTGTCCCCCTAGTGGCAGTTGGAGCTGCCAACTGCA
TCAACATCCCCTGCATGCGAATGCAAGAGCTGCGCAACGGAGTGACGCTT
TTCGATGAACACAGCAACGAAATGGGCATCTCAAAGAAGGCGGCCGTTGT
TGGGATCTCAACCGTAATCCTAAGTCGAATCGCCATGGCCATACCGGGAA
TGACACTGACACCGGTGTTGATGAATGTCCTCGAAAAGAGGGGATTCCTG
GCTAAATACCCCGCGATCCAACGCTCCCATCCAAACGCTCTTCTGCGGCT
TCGTGCTGATTTTCGCCACGCCCCTTGGCTGCGCCTTCTTCAGGCAGCGA
GCGGACATCAAAGTGGAATAGCCTGAAGTCGGAGGTCCGCGACAGCATTA
GGAAGAGCGTCCGGAATTGGAAACTGTCTGGTTCACAAAGGGACTGGCCA
AGCTTTCTAGACCATTCGTTTGGGCGCGCCGGGCCCAGGGTAGCTGTCAT
TATCATATCCATAATCATGATCATCATC
FMO04317.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11739-RB | 1378 | CG11739-RB | 149..1112 | 32..996 | 4695 | 99.3 | Plus |
| CG11739-RD | 1320 | CG11739-RD | 91..1054 | 32..996 | 4695 | 99.3 | Plus |
| CG11739-RA | 1645 | CG11739-RA | 416..1379 | 32..996 | 4695 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4380703..4380944 | 754..996 | 1010 | 97.1 | Plus |
| 3R | 32079331 | 3R | 4379455..4379623 | 32..200 | 830 | 99.4 | Plus |
| 3R | 32079331 | 3R | 4380109..4380270 | 464..625 | 810 | 100 | Plus |
| 3R | 32079331 | 3R | 4379674..4379825 | 195..346 | 760 | 100 | Plus |
| 3R | 32079331 | 3R | 4380504..4380631 | 626..753 | 640 | 100 | Plus |
| 3R | 32079331 | 3R | 4379927..4380046 | 345..464 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:21:06 has no hits.
FMO04317.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:06 Download gff for
FMO04317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11739-RA | 416..1379 | 32..996 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:28:59 Download gff for
FMO04317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11739-RC | 72..1035 | 32..996 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:03 Download gff for
FMO04317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11739-RA | 416..1379 | 32..996 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:03 Download gff for
FMO04317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4380504..4380631 | 626..753 | 100 | -> | Plus |
| 3R | 4380703..4380948 | 754..1003 | 95 | -> | Plus |
| 3R | 4379444..4379618 | 21..195 | 97 | -> | Plus |
| 3R | 4379675..4379824 | 196..345 | 100 | -> | Plus |
| 3R | 4379928..4380045 | 346..463 | 100 | -> | Plus |
| 3R | 4380109..4380270 | 464..625 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:06 Download gff for
FMO04317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 205166..205340 | 21..195 | 97 | -> | Plus |
| arm_3R | 205397..205546 | 196..345 | 100 | -> | Plus |
| arm_3R | 205650..205767 | 346..463 | 100 | -> | Plus |
| arm_3R | 205831..205992 | 464..625 | 100 | -> | Plus |
| arm_3R | 206226..206353 | 626..753 | 100 | -> | Plus |
| arm_3R | 206425..206670 | 754..1003 | 95 | -> | Plus |
