FMO04319.5prime Sequence
1243 bp (1032 high quality bases) assembled on 2008-07-30
> FMO04319.5prime
TCGTATAGCATACATAAAACGAAGTTATCAGTCGACATGTTGCCCAACCT
GAAGTCGCGCCGCATCAGCGGCCTGCAGCTGGCCGGGAAGCACCTGGGTC
CGGTGGCCAAGTGCCCGCCCAGATATTCCGAGGAGGACTGGGACTATAAC
AACAAGATCAAGTTTCGAATCACCTGCGACCAGGAGAAGCTGGCGGAGCG
GATCGTGGAGGAGTCGCGTCGCGTGGTGGACGAAACGAAGGACACCACCA
AGAACTGGCAACGGGAGGTGGAGCACCATATGCGCGAACGGACGAGCGAA
ATCCGATTCCTGGTGGACGAGTTGAATCGCCAGAAGAAGACCGCCGCCCT
GGAGGATGAGGCCTTGAACACCTATCGCAATCGCGTGCTGAACTGCATCG
AGTTCCTGAAGGACAAGTCGCTGGCCATTTGCAAGCAGTGCCTGATCCTA
CGCGAAGGTCGGATCGGTGTGGATTTGTGCGACGACGAGGTGGACCGCTC
GCTGCGCCGTGAGCTCAAGGTGATCAAGGGCTGTCAGGGATTGGCCGATG
CCGCCCTCAAGGAAGCCGAGGAGCAGATCCGCAAGCTGCGCGCCGCCATC
TATCTGCTCGATCAGGATTTGGCCGCCAAGGATAAGTCACTGGCCATCGA
CGAGAAGAACCTGAAGCTCAAGGAGTTCCAGCACGACCTGGCTAAGGGAC
AGGATTTGTCCAAACAGCATTGCCAATTTTCGCTGACCGAGTGGCAGGCG
CAGACGTACGAGAATCTGGAGGCCAACGCCAAGGCGCTGGTGTCCGCCGG
TCAGCTGCGGGCCTACATCGATTTGCTGCTGAAGCAGGTGTGCGAGGATA
TGCAGAACCAGACGGACAGGACCAACGAGGCCTTCGAGCGAAGGATCTCG
GAGACGAAGCACGTGAAACAGTGTTTGGAGACAAGCACAAGAACACCATG
GATCACATCCATCAGTGCAGCGCAACATGACCGAGCTGGAGAAGAGATGA
TGGACAAGCAGCGGGCCATTACACTGTGCCAGACGCGGCTCAGCAATCGC
CGCCCATCGTCTGCTGAGCTGACCTGGCGACATGGTCCAGGATGCCGCTT
ACACGAACTGCAGGCGCCTGAAGCAATCCGGTTGCAAGCCTCATCAGAGG
CTGAACGGAAACCAGCATCATGCCCTACTGATGCCACGTTCAGAGTGATG
TCGATGAGGAGGGATACTCACCTCAAGCAGCGCGAGATACAAC
FMO04319.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:59:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tektin-C-RD | 1613 | CG10541-RD | 187..1358 | 35..1200 | 5150 | 96.9 | Plus |
| Tektin-C-RC | 1549 | CG10541-RC | 123..1294 | 35..1200 | 5150 | 96.9 | Plus |
| Tektin-C-RA | 1524 | CG10541-RA | 98..1269 | 35..1200 | 5150 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:59:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5795549..5796061 | 722..210 | 2505 | 99.2 | Minus |
| 3L | 28110227 | 3L | 5794704..5795144 | 1157..722 | 1505 | 93.5 | Minus |
| 3L | 28110227 | 3L | 5796129..5796304 | 210..35 | 880 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:59:42 has no hits.
FMO04319.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:00 Download gff for
FMO04319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tektin-C-RA | 94..1207 | 30..1139 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:51:56 Download gff for
FMO04319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tektin-C-RB | 142..1255 | 30..1139 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:41 Download gff for
FMO04319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tektin-C-RA | 94..1207 | 30..1139 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:41 Download gff for
FMO04319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5794722..5795143 | 723..1139 | 95 | <- | Minus |
| 3L | 5795549..5796061 | 210..722 | 99 | <- | Minus |
| 3L | 5796130..5796310 | 33..209 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:00 Download gff for
FMO04319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5787822..5788243 | 723..1139 | 95 | <- | Minus |
| arm_3L | 5788649..5789161 | 210..722 | 99 | <- | Minus |
| arm_3L | 5789230..5789410 | 33..209 | 97 | <- | Minus |
