FMO04323.5prime Sequence
700 bp (700 high quality bases) assembled on 2008-07-30
> FMO04323.5prime
ACATTATACGAAGTTATCAGTCGACATGTCGTGTCCCAGGAGCATCGAGA
TACCAGATGGCAGTTGGATCGATTGGTTCCTGGGAATCAAGGGCCACGAA
TTCTCCTGCCGGGTGCCCAATGAATACATCCAGGACAAGTTCAATCTGAC
GGGCCTGGAGTTCGATAGCCAGACACTGGAGGTAGTCTTAGATCCGGAGT
TCGACAACGAGGACTGGGACTGCGCCGAAGAGAAGAAGCTGTATGGCATG
ATCCATGCACGGTACATCGTTTCGCCGCGTGGCATTGAAGATATGCGATT
AAAGTACGAAAGGGGGGACTTCGGATCGTGTCCGAGAGTCTTTTGTAAGA
GGCAGAAAGTCCTGCCAGTGGGCCTTCACGACGTGTGGGACAAGGCCCAA
GTTAAGATCTATTGCCCTAGCTGTAACAACGTCTACATCCCGCTACCCCA
CAATGGAATGCTGGACGGAGCCATGTTCGGGACCAGCTTCCCGCATATGT
TCTTTATGCAGCTGCCGAGCTTGATACCCTCTCCGCCCGTGGAGAAGTAC
ATCCCCCGTATCTATGGCTTCCAGTTGCACAAGAAGGCCCTGATGCCGCC
CGAATCAGCAGAGTCCCCGCCAATAAAGGTCGAATCCTCGGTCAGCAAGT
CCCCCTCCTGGCTAAGGAATGTCCCGAATTTTGCAAGCTTTCTAGACCAT
FMO04323.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ssl-RA | 908 | CG13591-RA | 75..732 | 25..682 | 3260 | 99.7 | Plus |
| CG40635-RB | 264 | CG40635-RB | 33..264 | 55..283 | 270 | 75 | Plus |
| SteXh:CG42398-RA | 615 | CG42398-RA | 56..157 | 60..161 | 225 | 81.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24499603..24500124 | 558..37 | 2595 | 99.8 | Minus |
| 2R | 25286936 | 2R | 24499419..24499543 | 682..558 | 610 | 99.2 | Minus |
| U | 3151297 | U | 827697..827923 | 557..328 | 365 | 78.3 | Minus |
| U | 3151297 | U | 2799521..2799748 | 328..558 | 355 | 77.9 | Plus |
| Ymm | 880023 | Ymm | 679391..679566 | 529..344 | 325 | 79.6 | Minus |
| U | 3151297 | U | 2799841..2800079 | 317..558 | 320 | 76.4 | Plus |
| U | 3151297 | U | 2799244..2799418 | 381..558 | 315 | 79.8 | Plus |
| U | 3151297 | U | 828079..828252 | 558..382 | 310 | 79.7 | Minus |
| U | 3151297 | U | 2889733..2890168 | 74..529 | 285 | 72.3 | Plus |
| U | 3151297 | U | 1942917..1942985 | 529..461 | 225 | 88.4 | Minus |
| U | 3151297 | U | 2792304..2792454 | 205..55 | 200 | 75.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:27:14 has no hits.
FMO04323.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:24:10 Download gff for
FMO04323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ssl-RA | 62..737 | 14..689 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:44:32 Download gff for
FMO04323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ssl-RB | 26..701 | 14..689 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:12:31 Download gff for
FMO04323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ssl-RA | 62..737 | 14..689 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:12:31 Download gff for
FMO04323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24499414..24499542 | 559..689 | 96 | <- | Minus |
| 2R | 24499603..24500124 | 37..558 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:24:10 Download gff for
FMO04323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20386937..20387065 | 559..689 | 96 | <- | Minus |
| arm_2R | 20387126..20387647 | 37..558 | 99 | <- | Minus |
