FMO04326.5prime Sequence
983 bp (983 high quality bases) assembled on 2008-07-30
> FMO04326.5prime
CATACCTTAAACGAACTTATCAGTCGACATGGGTGCTACAATGGTAAAAC
CGTTGGTAAAAAATGGAAATATTTTGGATGCACTGCCATCACAGGCAACT
CTACATGTAGTTATGTTAGGTTTGGATTCTGCGGGAAAAACAACGGCTTT
ATACAGACTTAAGTTTGATCAATACTTAAACACAGTGCCAACTATTGGAT
TTAATTGTGAAAAGGTACAATGTACCCTTGGCAAAGCAAAAGGAGTTCAT
TTTTTGGTTTGGGATGTCGGAGGACAAGAAAAATTGAGACCACTTTGGAG
AAGTTATACACGTTGCACTGATGGCATTTTGTTTGTTATTGATTCTGTTG
ATACAGAAAGAATGGAAGAAGCTAAGATGGAATTAATGCGTACCGCTAAA
TGTCCTGATAACCAGGGTGTTCCCGTTCTGATACTAGCAAATAAACAGGA
TCTGCCCAACGCTTGTGGTGCAATGGAACTGGAAAAACTTTTAGGACTGA
ACGAACTTTACAACCCGGTGCCTAATATATCAATGCCCTCTAGTTCCGAC
TCTTCTCCCACAATTAATTTAATTGGCTGTAGAGTTTCAAACCAAAGTAT
TACAGATAAATCTTTAGAAGAGAAAAAAGAGAGTCATCTGCATTCGTCTA
TGATTCACATAAAAACCTGCACTTGAAAGTAAAGACCACAATTCCACGTT
AAGCGGAGGAGCCTTGACAGCTTTTATATATCCGCAATCTCACAACAATT
CTGCTGTACTGGATCAAAAAAACCCACAAGATGTTAAAATGGTTTTCATA
ACAAAAAGATGAACAGGTCTTCATCAAATTCTGTGCAATTTAGGGGGTGG
TATATACAGCCAACCTGTGCTATAACTGGTGAGGGTCTCCAAGAAAGGTT
GGACGCTCTGTATGATATGATTTTAAAACGCCAAAATTTATAAGTCAAAT
AAAAGAAATCTGGCAGCTTTTCTAGACCATTCG
FMO04326.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:59:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arl4-RA | 1002 | CG2219-RA | 61..996 | 29..962 | 4550 | 99.3 | Plus |
| Arl4-RB | 1095 | CG2219-RB | 61..999 | 29..962 | 4510 | 98.9 | Plus |
| Arl4-RC | 958 | CG2219-RC | 338..952 | 351..962 | 2920 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:58:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 177444..177994 | 962..414 | 2550 | 98.7 | Minus |
| 4 | 1348131 | 4 | 179089..179213 | 217..93 | 625 | 100 | Minus |
| 4 | 1348131 | 4 | 178777..178881 | 416..312 | 525 | 100 | Minus |
| 4 | 1348131 | 4 | 178937..179036 | 312..213 | 500 | 100 | Minus |
| 4 | 1348131 | 4 | 179263..179329 | 95..29 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:59:00 has no hits.
FMO04326.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:35 Download gff for
FMO04326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2219-RA | 59..1002 | 26..969 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:44:38 Download gff for
FMO04326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2219-RA | 24..965 | 26..967 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:21 Download gff for
FMO04326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arl4-RA | 59..1002 | 26..969 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:21 Download gff for
FMO04326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 177440..177992 | 416..967 | 98 | <- | Minus |
| 4 | 178778..178880 | 313..415 | 100 | <- | Minus |
| 4 | 178937..179034 | 215..312 | 100 | <- | Minus |
| 4 | 179092..179211 | 95..214 | 100 | <- | Minus |
| 4 | 179264..179331 | 26..94 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:35 Download gff for
FMO04326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 198066..198618 | 416..967 | 98 | <- | Minus |
| arm_4 | 199404..199506 | 313..415 | 100 | <- | Minus |
| arm_4 | 199563..199660 | 215..312 | 100 | <- | Minus |
| arm_4 | 199718..199837 | 95..214 | 100 | <- | Minus |
| arm_4 | 199890..199957 | 26..94 | 98 | | Minus |
