FMO04327.5prime Sequence
1228 bp (1011 high quality bases) assembled on 2008-07-30
> FMO04327.5prime
TAGCATACATTAAACGAAGTTATCAGTCGACATGACGGACAATGATAAGA
AGACCGAAGAAGAAATCAGGCGGGAGATCGCACGGGAATTTGATTTGCCT
GAGCGCAAGTCCAAGATAGCCACCATTCTTAAGCAGAAAGACCGTGAGTA
CTGCATATGCCGCTCCTCCGACTGCTCCAGGTTCATGATAGGCTGCGATG
GTTGCGAGGAGTGGTACCACGGCGACTGTATAGAGATCACCGAGAAGGAC
GCTGAGCACATCAAAAATTACTACTGCCGGCGCTGCAAAAAAGAGAATCC
CGAACTGCAGACTATATTCCGCCTGGTGGCCACCGAACGTGCAGCCGCAT
CGAACGCCGCCTCTACAAGTCTCAATGCCCCGGGCGTAGGTCCATCGGGA
GCTGCGCCTGCTGCTGCACCGGTGGCGCCCGCAACAACCAGCCAGCAAGC
GCCGCCACCGACCACTGCGGCAGCGAAGCGCAAAAACAGCAGCGCCCAAG
AACCAAAGGAGTCGCAGCCGACTCAAGCAGGTACGAAGCGGGATAAGGCG
GCACCCAAGACTTCCAATGTCCAGGTGAGCCCGCGGGCGGTCAGTCCGGA
GATATTCCTCAATCCGGAGCTACAGGGCATCCAGCAGTGCCACGGACCCA
ATTGCTGCTCCCATGCGAGGCCGCAGAGCAAGTACTGCAGCGATGAGTGT
GGCTCTAATCTAGCCATCGAACGCCTATTTCAGATTCTGCCGCAACAAAT
GCAAGAGTGGAATATTACGCCTAGCCGCGCCGCCGAGGAAACACGCAAGC
ATCTAGAGCTCAACATGGACGAGCTGGTGCTCAAACAGCAGGAGCAACTG
GAGGAGTTCGAGAAGCAGAGGCAACAGATACAGACTCAGCAGAACAGTAC
CAAGAGAAGCAAAAGCTAATGTTGCAGCAACAACCGCAGCAGCAGCAACA
ACAAGCAGAGTTACAACACAGCAGTAGTTGCAACAACAGCAGGAGCAGGA
GCACAACAGTTGCTGCCACACTGCACTTGAAGCCCACATACATGTCCAGC
AACTGCAACTGCAATTGCAGCTGTTTGCCAGCAGCAGCGACGCTGTTGCA
GCCACAACAGCCATTAACCCGGAAAATTCAGTCAAGCTTTCTGAGCATTC
GTTGGCCCGCGGCCCAGTAATGTCAATCCTAATCTAATCCTATCATAACC
CACCTCTAGCCCTAGGAAGAACTCGCTC
FMO04327.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17440-RA | 1300 | CG17440-RA | 128..1226 | 28..1127 | 5085 | 98.1 | Plus |
| Cfp1-RB | 2344 | CG17446-RB | 91..554 | 45..508 | 2020 | 95.7 | Plus |
| Cfp1-RA | 2404 | CG17446-RA | 163..614 | 57..508 | 1975 | 95.8 | Plus |
| Cfp1-RB | 2344 | CG17446-RB | 689..994 | 505..804 | 965 | 87.9 | Plus |
| Cfp1-RB | 2344 | CG17446-RB | 1635..1789 | 815..950 | 275 | 79.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9268971..9269514 | 733..190 | 2720 | 100 | Minus |
| X | 23542271 | X | 9272285..9272603 | 508..190 | 1400 | 95.9 | Minus |
| X | 23542271 | X | 9268526..9268908 | 1111..730 | 1355 | 94.8 | Minus |
| X | 23542271 | X | 9271933..9272118 | 716..531 | 690 | 91.4 | Minus |
| X | 23542271 | X | 9269577..9269710 | 189..56 | 670 | 100 | Minus |
| X | 23542271 | X | 9272666..9272798 | 189..57 | 575 | 95.5 | Minus |
| X | 23542271 | X | 9271784..9271858 | 804..730 | 285 | 92 | Minus |
| X | 23542271 | X | 9271086..9271143 | 872..815 | 230 | 93.1 | Minus |
| X | 23542271 | X | 9270989..9271069 | 950..871 | 220 | 87.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:02:56 has no hits.
FMO04327.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:08 Download gff for
FMO04327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17440-RA | 121..1229 | 22..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:51:57 Download gff for
FMO04327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17440-RA | 108..1216 | 22..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:49 Download gff for
FMO04327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17440-RA | 121..1229 | 22..1130 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:49 Download gff for
FMO04327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9268509..9268904 | 734..1130 | 94 | <- | Minus |
| X | 9268971..9269514 | 190..733 | 100 | <- | Minus |
| X | 9269577..9269710 | 56..189 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:08 Download gff for
FMO04327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9162542..9162937 | 734..1130 | 94 | <- | Minus |
| arm_X | 9163004..9163547 | 190..733 | 100 | <- | Minus |
| arm_X | 9163610..9163743 | 56..189 | 100 | <- | Minus |
