FMO04329.5prime Sequence
438 bp (438 high quality bases) assembled on 2008-07-30
> FMO04329.5prime
AGCATACCTTAAACGAAGTTATCAGTCGACATGGCGACACGTGTGGTGGC
AACGGCGACAGTGCGGGCGGTGAAAGGCCGGAAGTTAATCCCGACGCGGG
CCGCTCTGACTCTGACACCCGCGGCGGTGCTACGCATCAAGACGCTTCTG
CAGGACAAGCCGGACATGGTTGGCCTAAAGGTGGGCGTACGGCAGCGAGG
ATGCAATGGTCTGTCCTACACGCTGGACTATGCCAGCCAAAAAGACAAGT
TGGATGAGGAGGTGGTCCAGGATGGCGTCAAGGTCTTCATCGACAAGAAA
GCGCAGTTGTCGCTGCTGGGTACCGAGATGGACTTTGTGGAATCGAAGCT
GTCCAGCGAGTTCGTGTTTAACAATCCGAACATTAAGGGCACATGCGGCT
GCGGCGAATCGTTCAGCATGGCAAGCTTTCTAGACCAT
FMO04329.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0136-RA | 780 | CG8198-RA | 100..489 | 31..420 | 1950 | 100 | Plus |
| l(1)G0136-RB | 783 | CG8198-RB | 100..492 | 31..420 | 1910 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15735388..15735489 | 319..420 | 510 | 100 | Plus |
| X | 23542271 | X | 15734369..15734452 | 31..114 | 420 | 100 | Plus |
| X | 23542271 | X | 15735245..15735324 | 243..322 | 400 | 100 | Plus |
| X | 23542271 | X | 15735098..15735174 | 168..244 | 385 | 100 | Plus |
| X | 23542271 | X | 15734552..15734608 | 114..170 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:39:22 has no hits.
FMO04329.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:48 Download gff for
FMO04329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0136-RA | 98..492 | 27..424 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:47:07 Download gff for
FMO04329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0136-RA | 88..482 | 27..424 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:51 Download gff for
FMO04329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0136-RA | 98..492 | 27..424 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:51 Download gff for
FMO04329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15734367..15734452 | 27..114 | 97 | -> | Plus |
| X | 15734553..15734606 | 115..168 | 100 | -> | Plus |
| X | 15735099..15735174 | 169..244 | 100 | -> | Plus |
| X | 15735247..15735321 | 245..319 | 100 | -> | Plus |
| X | 15735389..15735492 | 320..424 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:48 Download gff for
FMO04329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15629422..15629525 | 320..424 | 98 | | Plus |
| arm_X | 15628400..15628485 | 27..114 | 97 | -> | Plus |
| arm_X | 15628586..15628639 | 115..168 | 100 | -> | Plus |
| arm_X | 15629132..15629207 | 169..244 | 100 | -> | Plus |
| arm_X | 15629280..15629354 | 245..319 | 100 | -> | Plus |
