FMO04338.5prime Sequence
1229 bp (1016 high quality bases) assembled on 2008-07-30
> FMO04338.5prime
GCATAATAAAACGAAGTTATCAGTCGACATGAGGGAGATTGTCACACTGC
AGATCGGCGGAGCCGGAAATGCCATCGGAGATTCTTTCTGGCACGTGATT
TCACATGAACACGGTGTGGATTATGCTTCTGGTCGATTTGGCGGCACCAG
TCCACTTCAGCTGGAGCGGATCAATGTGTTCTTTAACGCAACGGCCAGCA
AACGGTTCTATGCCCGCACCATACTGATAGACACGGAAGCCAGCACCATT
CAGCGTCTCAACGCCAGCAGTCAGCTGTATAGGCCGGAGAACTTTGTGGC
TGGATCGGAGAGTGCTGGGAACAACTTTGCACGTGGCTATCATACGGATG
GTGCCGCCATTCTAGATCAGGTGCTAGAAAATACGCGCCGGGAGGTCGAA
TCGGTGGATTCGTTGCAGGGCTTTCAGTTGCTCCACTCTATCGGAGGCGG
AACTGGCTCCGGCTTGACCTCTCTAATAATGGAGGCCCTGGTGGAGCAGT
ATCCGGATAATTTACTCTGCAACTATGTGACCATTCCGTCGCCGAATATG
TCGCAGGTGGTTGTGGAACCCTATAATGCCCTACTTAGTACTCCCGCCTT
GGTTAACAATTCGCATTTAACCTTCTGCCTTGATAACGAGGCACTGTTCC
AAATCTGCAATAGAAACCTGAAGCTCAAGATGTCCGGCTACGAGCACATT
AACCACATAGTAGCCCTGACCATGTCGGGTATAACCACTTGCCTGCGGTT
TCCTGGCCAACTGAATGCTGGATTGCGCAAGATCTATGTAAATATGGTGC
CATTCCCGCGGCTGCACTTCCTCATACCGGGATTCGCACCATTGGTCACT
TGCAAGCAGCAGCAGTTCAGCAAGGGTACCGTTTCGGAGCTGGTGCAGCA
GATCTTCTACAGTAATAATCTGCTCTGTGCCATCGATTTTCGAAAGGCAA
ACTGCTGACCGCTGCTGGAATTTTCCGAGGAAGATGTCAACGCGTGAGGT
GGATCACTGATGACTGGTGTGAAGAAATAAGAATATCAACATTTCGTTGA
ACTGATACCAACAATATCAGACGGCTATTGCGAATTTACCGCCGAGGGCC
TCAAAATGTCAGCTACATCATTGGCCACCAACGGCGAAATCGACGCCTGT
TTCAGGATACTGACGTCAGTTCAAGGTGCGGCCAGGTCCACTCTCTCTCG
CGTGTATCCAGGAAAGATAGAGGAATCGT
FMO04338.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32396-RA | 1649 | CG32396-RA | 129..1251 | 23..1137 | 5160 | 98 | Plus |
| betaTub85D-RA | 1841 | CG9359-RA | 924..1045 | 719..840 | 220 | 79.7 | Plus |
| betaTub60D-RB | 2515 | CG3401-RB | 907..1028 | 716..837 | 205 | 78.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6530972..6532010 | 86..1118 | 4605 | 98 | Plus |
| 3L | 28110227 | 3L | 6530857..6530919 | 23..85 | 300 | 98.4 | Plus |
| 3R | 32079331 | 3R | 9409179..9409300 | 840..719 | 220 | 78.7 | Minus |
| 2R | 25286936 | 2R | 24311491..24311612 | 716..837 | 205 | 77.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:57:51 has no hits.
FMO04338.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:59 Download gff for
FMO04338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32396-RA | 122..1254 | 15..1141 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:49:37 Download gff for
FMO04338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32396-RA | 122..1254 | 15..1141 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:36:05 Download gff for
FMO04338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32396-RA | 122..1254 | 15..1141 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:36:05 Download gff for
FMO04338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6530850..6530919 | 15..85 | 92 | -> | Plus |
| 3L | 6530972..6532034 | 86..1141 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:59 Download gff for
FMO04338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6523950..6524019 | 15..85 | 92 | -> | Plus |
| arm_3L | 6524072..6525134 | 86..1141 | 97 | | Plus |
