FMO04339.5prime Sequence
1211 bp (1064 high quality bases) assembled on 2008-07-30
> FMO04339.5prime
TCGTATAGCATACATAAAACGAAGTTATCAGTCGACATGAAAAGAGTCCA
TGTCGATAACTACGCTCCAAAGTACTACAGCGGCAAGTGGTCATGGGACT
CGGAGAAGGACTGCCTCAACTTTCAGGCGCACAACGATCTGGAAAACGCA
AGAGAGCGCTATATAATCACCAATGGGTACAAGTTCCTGCGTACCATCGA
CCAAGAGGAGGAGCTTATCTTCCGGCAGGAGTATGTACGCGCCAAGTCCA
ACACCAGTGACACAGTGGTGCTAAGAGATATTCGAGATCTGGTGCTCTAC
TTGATGCCTAAAGACTTTCTAACCTACAAGTTCATTGAATTCATGCATGA
GCCACAGGTGCAGTCCGTGCTCCACGCCTTAACATTGTACTTTGAGTACT
ACCTACGCCTGGTGGAGTTCGTCCTGATTCGCAGAGATGAACTCTCTGGC
CAGATGGCCCAAATTCAGAGCGAGCAGACCACTGAGATGAAGAAAACCTA
TTCCGTTTACCTGAGCCACTTCCGCATGCTATTAGCCCGAAACTACTGTG
AGATTATCAAGGGCGAGGGATCTATGGCCAAGTACTACCACATGAAGCCG
ATTTCCAACATTTCAGCAACTATCCACGATAAGTACTTCCATGAGCATTT
TCTGGCAGTATCCATCCAAATAGTCTGGATATGCATGCATCGCCGAGCGT
ATTTCGTCATCGAAATGGAGATGAATCGGCTTTTCCGGTCGGAGCACTTT
GTTTCCGTCCGCCCTGAGTACCTTGAGTTCACGGAGGCGGAGCGAAGTCT
TCTTTACGGCCGAAACAACAAGAACCTCAATTATCGCGTCCAGATCTCTC
CGCTGGTCCAAGAGTTGGAGCATGTTGTGACGGAGGATTTGCCCATTCTG
TGATAGGAAAGCGTAAGTATAGGGGCACTGATCCTCACATCGCTCAGATC
GAGTTGGAGTACGTTGTGCCCGGATCGCAGCTCCGCTTGATTGATCTGTC
CCATGGAATCCTTGGCCACCCGAAGAATCTCTACACACCCTTCTGACCTC
GACTGCCAGCAGTCGTTCTCAACTTTCGGAGCATACGACCCATATCTATC
ATCGACGAACCACCTGACATTCCCAGGTGGTGACTGAATGCCAATTGGGG
AGTTCAGACTTACAGAACCTTCCTTTCCGACATTCCCATTCCAATAATCG
CAAGGTGGGTT
FMO04339.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31391-RA | 1704 | CG31391-RA | 87..1188 | 37..1125 | 5185 | 98.8 | Plus |
| CG31467-RA | 1694 | CG31467-RA | 142..1151 | 49..1055 | 1915 | 79.7 | Plus |
| CG14689-RA | 1661 | CG14689-RA | 109..1125 | 36..1055 | 800 | 73.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10703978..10704989 | 1046..37 | 4960 | 99.8 | Minus |
| 3R | 32079331 | 3R | 10705735..10706722 | 1035..49 | 1860 | 79.5 | Minus |
| 3R | 32079331 | 3R | 10710947..10711140 | 229..36 | 475 | 83 | Minus |
| 3R | 32079331 | 3R | 10710146..10710716 | 1035..466 | 435 | 72.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:05:01 has no hits.
FMO04339.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:27 Download gff for
FMO04339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31391-RA | 87..1198 | 37..1133 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:51:59 Download gff for
FMO04339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31391-RA | 87..1198 | 37..1133 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:24 Download gff for
FMO04339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31391-RA | 87..1198 | 37..1133 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:24 Download gff for
FMO04339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10703878..10704989 | 37..1133 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:27 Download gff for
FMO04339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6529600..6530711 | 37..1133 | 98 | | Minus |
