FMO04340.5prime Sequence
535 bp (535 high quality bases) assembled on 2008-07-30
> FMO04340.5prime
AACTTCGTATAGCATACATAAAACAAAGTTATCAGTCGACATGCCCAACT
TTAATGGGGCTATTATAGTGCACACACTTCAGTTGTTGAAAGCGCCGGCG
ACACTGCGAGAAATAGTGGTAACCATAGCCAAAAATACGGAATTATCGCA
AGATGAGCTTAAAGAGCCTGTGAAACAAACCCTTGAAATGGGCCATCGCT
TGGGATTCCTGCAGAAACTCGACGGTCGCTACTTTTTGATGAATGTGACC
TTCGAGACATTGATGTCTGAGATGGAGGCCCTTGACAAAGAAGAATCTCC
GGAGAAGTCACTTAAAAAGAAAAAGAAATTAATACCCAAGACTCCTTTAT
CGTCGGTCGCTGAGAAAAAAATTAATAAGAAGCCAAGTCAAGTCAAGACA
ACGGAACAGTTGGTAAAGTCAAAACCAACTGAAAAGGGCCGACTGCAGGA
CATTCCTAGTTCATCCACAAACATAAGAAAAACGCCATCCAAGCTGATTA
AGCGAACAGTTTTTAAGGCAAGCTTTCTAGACCAT
FMO04340.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5968-RB | 723 | CG5968-RB | 74..550 | 41..517 | 2385 | 100 | Plus |
| CG5968-RA | 581 | CG5968-RA | 74..550 | 41..517 | 2385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16549354..16549647 | 517..224 | 1470 | 100 | Minus |
| 2L | 23513712 | 2L | 16549701..16549886 | 226..41 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:58:05 has no hits.
FMO04340.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:10 Download gff for
FMO04340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5968-RA | 74..555 | 41..523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:49:38 Download gff for
FMO04340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5968-RA | 74..555 | 41..523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:36:13 Download gff for
FMO04340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5968-RA | 74..555 | 41..523 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:36:13 Download gff for
FMO04340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16549703..16549882 | 45..224 | 100 | -> | Minus |
| 2L | 16549349..16549646 | 225..523 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:10 Download gff for
FMO04340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16549349..16549646 | 225..523 | 99 | <- | Minus |
| arm_2L | 16549703..16549882 | 45..224 | 100 | -> | Minus |
