FMO04341.5prime Sequence
452 bp (452 high quality bases) assembled on 2008-07-30
> FMO04341.5prime
AGCATAATAATACAAAGTTATCAGTCGACATGAGGAAAATCATGAAGCAG
GGCAAGATCGTAATCGTCCTTAGCGGACGTTACGCCGGTCGCAAGGCCAT
CATCGTCAAGACCCACGACGATGGAACCCCGGAGAAGCCCTTCGGACACG
CCCTCGTCGCCGGTATCGATCGCTACCCGCGCAAGGTGACCAAGAAGATG
GGCAAGAACAAGCTGAAGAAGAAGTCCAAGGTCAAGCCCTTCCTGAAGAG
CCTGAACTACAATCATCTGATGCCCACCCGCTACACGGCGCACGACATCA
GCTTTGAGAAGCTGTCGCCCAAGGACCTGAAGGATCCCGTAAAGCGCAAG
ACGCACCGCTTCCAGACCCGCGTCAAGTTCGAGTCCGTCTACAAGGAGGG
CAAGAACAAGTGGTTCTTCCAGAAGCTGCGTTTCGCAAGCTTTCTAGACC
AT
FMO04341.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:14:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL27-RD | 987 | CG4759-RD | 108..512 | 30..434 | 2025 | 100 | Plus |
| RpL27-RC | 544 | CG4759-RC | 49..453 | 30..434 | 2025 | 100 | Plus |
| RpL27-RB | 603 | CG4759-RB | 108..512 | 30..434 | 2025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:14:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25684098..25684502 | 434..30 | 2025 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:14:12 has no hits.
FMO04341.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:00:20 Download gff for
FMO04341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL27-RB | 108..518 | 30..441 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:47:13 Download gff for
FMO04341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL27-RA | 82..492 | 30..441 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:11 Download gff for
FMO04341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL27-RB | 108..518 | 30..441 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:11 Download gff for
FMO04341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25684092..25684502 | 30..441 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:00:20 Download gff for
FMO04341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21509814..21510224 | 30..441 | 99 | | Minus |
