FMO04343.5prime Sequence
1205 bp (1013 high quality bases) assembled on 2008-07-30
> FMO04343.5prime
TAGCATACATTATACGAAGTTATCAGTCGACATGGCATTCTACGATACTT
GGCCGAAAGTAGATCCAATCATAGTGCTGGTGGTGTTATGTCTGATCGTG
TTAGTTGACCGGATATGGGAGATGATACTCACCAAGAGGCAGCAATTGGT
GTGCCTGAATGCGATTATGGTGCCGGAGGAGTTGAGAGGAATCATTCCGC
CGGAGATTTACCATCGGGCCCGCATCTACGAGCTGCATAAAACGGAGCTA
CAGATATGGAAGTACCTCATCGACTTGATTATTACGCTCTGTGAGCTGAT
ATTGGGCTTCTATCCATTCCTCTGGAGCTTGTCTGCGAAGACTCTACAGA
AAATAACCTCCCAAGAGATCTGGATAACCTTGATCTTTGTTTTCTACCTG
ACCATTTACATTTGTATAAGGTTCCTGCCGGTTCTGATCTATGACAAGTG
CCTGCTGGAGTTGCGATATGGGATGTCGGGCAAGTTTCCTTGGTACCTCT
ACTGCTGCATTGGAGCAATGTCCATTCTCCTAAGCCAGCTCGTCCTGTTC
CCGTTGGCGGCGGCCATTGTGTTCAGCGTAAAGTTCATTGGGTACTACTT
CTTCCTTTGGTTCTGGCTGTTCTGGGCTACGTTCACCCTGTTGCTGGTAT
TTTTTTTGCCCTACTGCTGCATTCCGTGCATTGGACGACAGGTGGTTTTA
CCAGAGGGCACTGCCCTCTATATGGAGGTGAAGCGTGTTTGCGATGTGGT
TGGCTTCCCCATGAAGAGGGTATTTATCATAAAGACCCGGACAATGCAGT
ATAGTAATGCCTACTTTTACGGGAGCTGCTGCCTGAAAAGAATTGTAATT
TTTGATACCTTGCTATTGAACAAGGGCAAGGAACCCAATGAGATCCATCC
CTATGAGGTGGGCAGAGGTCTGACCACATCCAGGTGCGGGCGTGGTGTGT
CACGAGTTGGGTCACTGGAAGCACGGACATTTCTACTAGCTACGATCATC
ATGAGATTCACTTCGTTATCACATGGACTGTTCGGATGTTCTTCACTCTC
CCACTATACATGCATGGATTCGAGCTGAGTAGGCCATCTAAGGGGATCAT
CATGTCTGACTGCTGACTCTAATCTCAGCTGCAGTCTTGATGCTGATCTC
GGCCTTCCGATTGAAATACGGCCCAGCGCTAATAACTTGAGCCTCACTCG
CCACT
FMO04343.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:59:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ste24c-RC | 2251 | CG9002-RC | 25..1065 | 32..1062 | 4850 | 98.4 | Plus |
| ste24c-RD | 1716 | CG9002-RD | 25..1065 | 32..1062 | 4850 | 98.4 | Plus |
| ste24c-RA | 2228 | CG9002-RA | 25..1065 | 32..1062 | 4850 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:59:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16997517..16998403 | 1022..140 | 4145 | 98.9 | Minus |
| 2R | 25286936 | 2R | 16998460..16998570 | 142..32 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:59:11 has no hits.
FMO04343.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:43 Download gff for
FMO04343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ste24c-RA | 25..1072 | 32..1067 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:47:16 Download gff for
FMO04343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9002-RB | 25..1072 | 32..1067 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:26 Download gff for
FMO04343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ste24c-RA | 25..1072 | 32..1067 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:26 Download gff for
FMO04343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16997536..16998400 | 143..1004 | 99 | <- | Minus |
| 2R | 16998460..16998570 | 32..142 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:43 Download gff for
FMO04343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12885041..12885905 | 143..1004 | 99 | <- | Minus |
| arm_2R | 12885965..12886075 | 32..142 | 100 | | Minus |
