Clone FMO04346 Report

Search the DGRC for FMO04346

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:43
Well:46
Vector:pMK33-CFH-BD
Associated Gene/Transcriptms(2)35Ci-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO04346.5prime Sequence

451 bp (451 high quality bases) assembled on 2008-07-30

> FMO04346.5prime
GTATAGCATACATTAAACGAAGTTATCAGTCGACATGCCAATAATCAAGA
AGTTCTGCTATTGTTTTAGTCTAAGAATTGGCGCATTTTCAATTGCGTAC
GCAGGTCTTACAATGGATGTATTAGATACAGTAGCGACTATATATACTAA
GTCGCAATATTGCGCTGATATACTACTCCTCTGGATAATTTCCACCATTT
GGAATATCATTTCCGCATTGGTTCTTTTGACTGCACTTTTTCGGGAAAAT
CCGCATTTGCTGCCAGTTCATCTGGTGACTTCTCTTTGTGGCCTGATGCT
CGAAATGACCAATCACATGGTGATTGCCTCCCTTGGCAGAACCGATTACG
TTTTGATATCCTATGCGTTCATTATGATTGCCTTTGTATCTGCGGACGTC
GTGATCGTGCTGAGCTACTACCAATCGGAGGTTGCAAGCTTTCTAGACCA
T

FMO04346.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:24
Subject Length Description Subject Range Query Range Score Percent Strand
ms(2)35Ci-RC 1489 CG31733-RC 213..611 35..433 1995 100 Plus
ms(2)35Ci-RA 1127 CG31733-RA 213..611 35..433 1995 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15292737..15292947 35..245 1055 100 Plus
2L 23513712 2L 15293003..15293147 239..383 710 99.3 Plus
2L 23513712 2L 15293209..15293258 384..433 250 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:46:23 has no hits.

FMO04346.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:40 Download gff for FMO04346.5prime
Subject Subject Range Query Range Percent Splice Strand
ms(2)35Ci-RA 204..611 25..433 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:49:35 Download gff for FMO04346.5prime
Subject Subject Range Query Range Percent Splice Strand
ms(2)35Ci-RA 127..534 25..433 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:33 Download gff for FMO04346.5prime
Subject Subject Range Query Range Percent Splice Strand
ms(2)35Ci-RA 204..611 25..433 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:33 Download gff for FMO04346.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 15292735..15292946 32..244 99 -> Plus
2L 15293009..15293147 245..383 100 -> Plus
2L 15293209..15293258 384..433 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:40 Download gff for FMO04346.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15292735..15292946 32..244 99 -> Plus
arm_2L 15293009..15293147 245..383 100 -> Plus
arm_2L 15293209..15293258 384..433 100   Plus