FMO04348.5prime Sequence
753 bp (368 high quality bases) assembled on 2008-07-30
> FMO04348.5prime
TCGTATAGCATACATAAAACGAAGTTATCAGTCGACATGGTGGGATCTCG
AGTGTATGTGGGCGGTCTGCCCTACGGAGTGCGCGAGCGCGATTTGGAGC
GCTTTTTCAAAGGCTACGGCCGCACACGCGACATCCTCATCAAAAATGGC
TACGGCTTTGTGGAATTCGAAGACTATCGTGATGCCGACGATGCCGTCTA
TGAACTGAATGGCAAAGAGCTGCTTGGCGAACGTGTGGTTGTTGAACCCG
CCAGGGGTACCGCTCGTGGCAGCAACCGCGACCGCTACGACGATCGATAT
GGTGGTCGGGCGGGGGGGCGGGGGCGGGTCGTTACAACGAAAAATCATCC
TCTCGTTATGGCCCACCGTTGCGCACTGAATACCGACTGATTGGGGAGAA
TTTGCCAGCCCGCGTTGCTGGCAGGATCCCAGGATTACATGCCCCGGGTG
GGCAAGGTCCCCTATGCCAATCCCACAAGCACCGTCCCATTGAGGGCGGG
GGTGAATTCCCCCTCGTTGGCGAAATTGAGACGGCCTTGAAAAATTGGAT
GAAACCCAACTAAACGGGAGGGGGGACCCCTTGGTCAAAGAATCTCCCGA
AAGAACACCGGGGGGGCGGGGACCCGAACATGAACTCCCCTTTTCTCCAG
TCCCATTCGTCTCGAAATCCGAGGGGTTTTCGTCGCCGCTGTCTACTCGC
TTAAGTCTGCACCTTCCAAATTTGGGGGAACCCAGTCAGTCTCAGTAGTG
TCT
FMO04348.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| B52-RN | 1725 | CG10851-RN | 314..866 | 36..586 | 2055 | 92.5 | Plus |
| B52-RC | 1557 | CG10851-RC | 146..698 | 36..586 | 2055 | 92.5 | Plus |
| B52-RA | 1565 | CG10851-RA | 154..706 | 36..586 | 2055 | 92.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13661733..13661860 | 36..163 | 640 | 100 | Plus |
| 3R | 32079331 | 3R | 13662296..13662404 | 233..343 | 455 | 98.2 | Plus |
| 3R | 32079331 | 3R | 13662160..13662231 | 162..233 | 360 | 100 | Plus |
| 3R | 32079331 | 3R | 13662970..13663030 | 344..404 | 275 | 96.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:13:37 has no hits.
FMO04348.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:59:52 Download gff for
FMO04348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| B52-RA | 149..570 | 31..451 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:44:44 Download gff for
FMO04348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| B52-RA | 160..581 | 31..451 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:50 Download gff for
FMO04348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| B52-RA | 149..570 | 31..451 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:50 Download gff for
FMO04348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13661728..13661859 | 31..162 | 97 | -> | Plus |
| 3R | 13662161..13662231 | 163..233 | 100 | -> | Plus |
| 3R | 13662297..13662404 | 234..343 | 98 | -> | Plus |
| 3R | 13662970..13663052 | 344..425 | 92 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:59:52 Download gff for
FMO04348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9488019..9488126 | 234..343 | 98 | -> | Plus |
| arm_3R | 9488692..9488774 | 344..425 | 92 | == | Plus |
| arm_3R | 9487450..9487581 | 31..162 | 97 | -> | Plus |
| arm_3R | 9487883..9487953 | 163..233 | 100 | -> | Plus |
