Clone FMO04352 Report

Search the DGRC for FMO04352

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:43
Well:52
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG31717-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO04352.5prime Sequence

659 bp (659 high quality bases) assembled on 2008-07-30

> FMO04352.5prime
AGCATAATAAAACAAAGTTATCAGTCGACATGAGGACGTCATCACCACCA
CTTAAATACCTATTGGAGAAGGATGTTCAGGTGTCGAAGCATTTCGTAGT
AGCCGTCTCCAATCTGTCGTTCTTCAAATCCCTGCGGATCCACAGCAGAT
TTCTGGAGATATCATGCGATGGAATCGCCTGGTTTGTCTCATGGATCGCC
TTCATCTGGTTGCTCAGCTCAAAGAGCTTGTATCAAATGCAAGTCAATAT
GCTCTTCGGCCTGATACTCGACGTGGTGATCGTGGCCGTGCTGAAGGCGC
TGGTTCGTCGCAGGCGACCCGTGGCCAGCAAGGATATGCTGACCATTGGA
CCCGATAAGTTCAGCTTTCCCTCAGGTCATGCCTCCCGGGCGTTCTTTGT
GCTCCTGTTCTTCGCCAAGCTGTACCCGCTCCACATCATATTCCTAATGC
CGGTCACAGCTTGGGCTGTAAGCGTGGCCATCTCACGGCTCATCCTCCAG
CGTCATTATATTTTGGATATCTGCGCCGGTGCTGCCATCGGAGTGTTGGA
GGCACTAATCGTGGGACTTCTGTGGATCAGCGAGGAAACTGCATTTAGCA
TTGTGGGCTTTGTTACCGAGGAAACTGTCGACAGCATGGAGGCAAGCTTT
CTAGACCAT

FMO04352.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:59:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG31717-RB 854 CG31717-RB 23..638 26..641 2930 98.4 Plus
CG31717-RA 790 CG31717-RA 79..694 26..641 2930 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:59:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10250895..10251498 38..641 2885 98.5 Plus
Blast to na_te.dros performed on 2014-11-28 21:59:46 has no hits.

FMO04352.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:02 Download gff for FMO04352.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31717-RA 76..697 22..645 97   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:52:03 Download gff for FMO04352.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31717-RA 76..697 22..645 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:42 Download gff for FMO04352.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31717-RA 76..697 22..645 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:42 Download gff for FMO04352.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10250895..10251501 38..645 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:02 Download gff for FMO04352.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10250895..10251501 38..645 98   Plus