FMO04360.5prime Sequence
1246 bp (1003 high quality bases) assembled on 2008-07-30
> FMO04360.5prime
CGTATAGCATACATAAAACGAAGTTATCAGTCGACATGTTAGGGAAAATG
TCGCGGAACGTGACGCTCTCGGATGAACAAAGTCGGCTTAATGCGCGTCT
GGAGGCGCACATGGTTTACATATGTCCGGAATGCGGCAAGGCGTTCCGCA
CTCAGGCGGAGTGGCGACAGCATCTGAACACGAAACACGACTATCTAAAG
AAGACGTACTCAGATTTCAACTTCATCCAGATCGACGAGCGATTCCATGA
GTGCCAGCTGTGCTTCAAATGGGTGGAGAATGCCCACAAGACAATCGCCC
TCCTGCAGTACCACTACTTTATGCATCTGGAGCACAGTGAAACCTACCGC
TGCGTGCACTGCCGCATGGCGTACACGAGGCGCCGGGCTCTGAACGTCCA
CCTACTGGACACGCACATGCGGGAGATCGAGAAGTACGAGAACAAGCTGC
GCCAGATGAAGCGGCAGCAGGCGAAACCCACTACAGCGGCCGCACCAGCT
GGAAATGCAGAGAAGCCGATGGCTGTGAAGCCGCGTGGGCGTCCCAAAGG
TTCCACGAACAGAAAGCAAAATGATCTGCTGCAAAAGGCGCTGATGGACA
TTGATCTGAACACAGAAATGGAAAAGTCCCCAGTGACAGCACTAGCGGCT
CCTGTAAACGAACCTAAGCCCATTTCAAATGTCAGCGAGCTGAATCTAGA
TCGGTGTTTGAATGCCTACGAGGACATCGTGCGCAAGGAGGAGAAAGAGG
TGGTGCCGAAGTATGACGACGAGTTGGATGCGCTCTGCAAGGAGTTTTTT
GATGATGGCCCCTCCGCCGGCAAAGGAGAAGCTAATGAGGAGCAGCAGCA
AGACGATGCGCACCTGCAGCAAGGAAATCAAGGAGGTGTTCATCATCGAG
ATCGATGCACTCGGCAAGGAGGAAGTGCCCAGCTGAAGAAGGAAATGAAG
TCGGACCCAATAAGTCAACCGACTAAGCGTTCGACGCCATCTCTACGACC
GCCCAGTGGCGACTCAGAACACGGAATGTCCACCAACGGCCTCACGAAGC
CTCATATCGTACTGTGTGTCCGAAGGTGCGGCAGGTAAATCCGCCTTCGA
TGGACCGTGGCGGGCCACACGTATTCAGAAGCACGACCTTCCGAGCACAT
ATATCCGAGAACACGTTTAAGATCTGGAATCGGCCAAGCATGGTCCTCCA
GTGCCGTGGAGGTTCACCACACAACCGCGTTGCCGCACTCTCACAC
FMO04360.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:15:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1024-RB | 1870 | CG1024-RB | 165..1332 | 36..1208 | 5130 | 96.9 | Plus |
| CG1024-RE | 2506 | CG1024-RE | 44..1211 | 36..1208 | 5130 | 96.9 | Plus |
| CG1024-RD | 2570 | CG1024-RD | 44..1211 | 36..1208 | 5130 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:15:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6379007..6379955 | 1137..182 | 4020 | 97.1 | Minus |
| 3R | 32079331 | 3R | 6380018..6380164 | 182..36 | 735 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:15:09 has no hits.
FMO04360.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:01:02 Download gff for
FMO04360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1024-RD | 44..1067 | 36..1063 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:49:40 Download gff for
FMO04360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1024-RC | 44..1067 | 36..1063 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:44 Download gff for
FMO04360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1024-RD | 44..1067 | 36..1063 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:44 Download gff for
FMO04360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6379078..6379954 | 183..1063 | 98 | <- | Minus |
| 3R | 6380018..6380164 | 36..182 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:01:02 Download gff for
FMO04360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2204800..2205676 | 183..1063 | 98 | <- | Minus |
| arm_3R | 2205740..2205886 | 36..182 | 100 | | Minus |
