FMO04364.5prime Sequence
1237 bp (951 high quality bases) assembled on 2008-07-30
> FMO04364.5prime
TTCGTATAGCATAATTATACGAAGTTATCAATCGACATGTCCAAAAGCAA
CTGCAGTGACTGCACATGCCGTTTGGCCAACGAGGTGGGCCAGCTAAAGG
CCATCGTGAATGCCCAGAGCAGGACGCTCGCCAAGCTGGTCCGTCAGATG
AAGGAAGGCTGCAAAAAGGACGAGGAGGCCAAGGAATCCACATTGTGCGG
CCTGAATCCCTGCCTGAAGTGCCTGCAGCCTGACATACTCTACCACCTGG
GCCTGAATACAGAAACCACGGACTTTCCCAAGGTTTTTGGTGATGTGAGG
TTTGTATGCATGGGAGGTACTCCGGGTCGGATGGAAAACTTTGCCTACTA
CGTGATGCAGGAGATCGGGCTGAAGATAAACGCGGCTACCAAGCTACGGA
ACATATCGGAGGCCGGCCAGCGATTCTCCTTGTTCAAGGTGGGTCCCGTG
CTCTGCGCCAGCCACGGAATGGGTTGTCCGTCGATCTCCATACTGCTGCA
CGAACTCATCAAGATGATGTACCACGCCAAGTGCAAGGACCCCGTCTTCA
TCAGAATTGGCACCAGCGGCGGCATTGGCGTTGAACCCGGCACCGTGATC
ATTTCCTCCGAGGCGATTGATGGTCGCTTGAATCCCGTCCACGAGATCCT
TGTGCACGGCGTCAGTGTCCAGCATGCCAGCCAGCTCGATGAGAGTCTGG
CCGATGAAATCAAGATGTGCCACGATCCCTGCAAGGACAAATATGAAGCT
GTCATCGGCCGGACTCTGTGTGCCCATGACTTCTACGAAGGCCAGTCGCG
CCTCGATGGAGCCTTCTGCGAGTACACGCCCGAAATGAAGAAATCCTACT
TGGAGACGCTGCATAGCCAGCAGTGAAGAATATCGAGATGGAGAGCTTGG
CCTTTGCCGCCCTCACCAGTATGGCCAACATCAGGGCGCGGTCGTCTGTG
TGACATCCTGAATCGCCTACATGGGGATCAAATCAAACGCCACATGATGT
TTTGTCCAAATGGGAGAAGAAACCTCTGGAGCTGCTGGACCCGCTATTAT
GCGCAAGGCTCTTTACATAACGACTATGACCAATGAGTCGGATCAACCTG
TGAGACAAGCCGAGGACGGAACCAGCTGGGTGGGCTGGGAAACCCAAAGC
GCCCTGTAGAAGAGCCAAGCAGCTTCCAACCATCGTTGGCCCCCGGTCCA
GGTATGTGTCCTAGATCCAATATCATATCCCTATCCA
FMO04364.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3788-RB | 1758 | CG3788-RB | 539..1665 | 37..1163 | 4940 | 96.5 | Plus |
| CG3788-RA | 1296 | CG3788-RA | 77..1203 | 37..1163 | 4940 | 96.5 | Plus |
| CG6330-RA | 1541 | CG6330-RA | 501..677 | 426..602 | 345 | 79.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22932364..22933048 | 981..300 | 3200 | 98.8 | Minus |
| 2R | 25286936 | 2R | 22933119..22933319 | 300..100 | 975 | 99 | Minus |
| 3R | 32079331 | 3R | 26951118..26951294 | 602..426 | 345 | 79.7 | Minus |
| 2R | 25286936 | 2R | 22933384..22933447 | 100..37 | 320 | 100 | Minus |
| 2R | 25286936 | 2R | 22932191..22932302 | 1098..985 | 240 | 88.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:45:23 has no hits.
FMO04364.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:08 Download gff for
FMO04364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3788-RA | 72..1100 | 29..1058 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:41:56 Download gff for
FMO04364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3788-RA | 72..1100 | 29..1058 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:00 Download gff for
FMO04364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3788-RA | 72..1100 | 29..1058 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:00 Download gff for
FMO04364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22932364..22933047 | 301..981 | 98 | <- | Minus |
| 2R | 22933119..22933318 | 101..300 | 99 | <- | Minus |
| 2R | 22933384..22933452 | 29..100 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:08 Download gff for
FMO04364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18819887..18820570 | 301..981 | 98 | <- | Minus |
| arm_2R | 18820642..18820841 | 101..300 | 99 | <- | Minus |
| arm_2R | 18820907..18820975 | 29..100 | 94 | | Minus |
