FMO04366.5prime Sequence
1078 bp (1036 high quality bases) assembled on 2008-07-30
> FMO04366.5prime
TCGTATAGCATACATAAAACGAAGTTATCAGTCGACATGGGCAATTGCCT
GAAATGCTTCCAGTCTGCCGCCGAACAATCGATGCCAACGAACGCCTCGT
CCCCCAATTCACACAATTCCAATTCCAACGCCTGCCAGACGGCCACCAGC
CTTGCAAATTGCTACGAATCGGTGGGCATTAATCCCAATGCCAACGAGCG
CTGCGCCTTAGAAACCGATGAACTGCTCTCTAGCCGAACTCCACTCAAGC
CAGCAAAAGCAAACAATTGTGATACTAAGCGTAATAGTTTTAAGTCTTTA
GGTTTGCTTAATGGCAGTGCGCCCACCATGAGCGATATCATAACAACTGC
TGTCCAGGAATCGATGGAGGTATCGCACCAAACGCTGAGCAAACTATTCG
ATGTGTACAAAGATCCCGACGACGAGGAGATGATACTCACGGACGGCATC
GAGCGACTGTGCAATGACCTCAACTATCAGCCCGATGAGTTCGCAATTCT
CGTCTTGGCCTGGTGCCTGGATGCCTCGCAGATGTGCCGCTTCACCAAGG
TGGAGTTCATTGAGGGTCTGCATAAGATGAGGGCGGACACAATAGACAGT
ATCCGGGTGCGGCTGGAGCAGACAATCGAGATGCTCAAGGCGGACGCCGA
GATGTTCAAGCAGTTGTACCGCTTTACATTCCGATTTGGTCTGGAGCCCG
ATCAGCGCGTCCTCTCTCTGGAGATGGCTATTGACCTGTGGAAACTTGTG
TTCACTGTACAAACACCTGATCTCTTCTCCAACTGGATACACTTCCTCGA
AAAGCACCCGAATATTCGCCGCATACCGAAAGATACATGGAAACATGTAC
CTCAATTTTACGGAACAATGTGATATACAAATTACGATGATACCGAAGCG
TGCCCAGCCTCTTCGACGACTTTGTCGACTAAGAGAAAAGCCGGGCGCTG
GTTTCCTCGGGCATCCACGACGATGACAACAACAACGACGATCCCTGCAG
AGCCACGTGAAGCCGAGGATCCGGGTCTTGTGTCAGCAAGCTTTCTAGAC
AATCGTTTGGCCGCCGGGCCCAGGTAGT
FMO04366.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13322-RB | 2053 | CG13322-RB | 531..1532 | 37..1035 | 4815 | 99 | Plus |
| CG13322-RC | 2105 | CG13322-RC | 583..1584 | 37..1035 | 4815 | 99 | Plus |
| CG13322-RA | 2041 | CG13322-RA | 519..1520 | 37..1035 | 4815 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12935166..12935500 | 683..349 | 1645 | 99.4 | Minus |
| 2R | 25286936 | 2R | 12934755..12935114 | 1035..679 | 1495 | 97.5 | Minus |
| 2R | 25286936 | 2R | 12935779..12935953 | 211..37 | 875 | 100 | Minus |
| 2R | 25286936 | 2R | 12935563..12935703 | 349..209 | 705 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:34:38 has no hits.
FMO04366.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:15 Download gff for
FMO04366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13322-RA | 519..1520 | 37..1035 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:47:30 Download gff for
FMO04366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13322-RB | 525..1526 | 37..1035 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:01 Download gff for
FMO04366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13322-RA | 519..1520 | 37..1035 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:01 Download gff for
FMO04366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12934755..12935109 | 684..1035 | 97 | <- | Minus |
| 2R | 12935166..12935499 | 350..683 | 99 | <- | Minus |
| 2R | 12935563..12935700 | 212..349 | 100 | <- | Minus |
| 2R | 12935779..12935953 | 37..211 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:15 Download gff for
FMO04366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8822260..8822614 | 684..1035 | 97 | <- | Minus |
| arm_2R | 8822671..8823004 | 350..683 | 99 | <- | Minus |
| arm_2R | 8823068..8823205 | 212..349 | 100 | <- | Minus |
| arm_2R | 8823284..8823458 | 37..211 | 100 | | Minus |
