FMO04367.5prime Sequence
565 bp (565 high quality bases) assembled on 2008-07-30
> FMO04367.5prime
TTCGTATAGCATACATAAAACGAAGTTATCAGTCGACATGACATTCTTCG
AGCAGATCAGTGATCACTTTTGCCGCGTTGTGCACACCAATCTCAAGATA
CCTCTATCATGTTGCGAAAGGCGCATCAACTGGAAAATCTCGAAAAGTAT
CGATTTATTGGTATTCTTTTATACCCTCAACATCGGTGTCCTTCGATTGT
TAATAAATTTTATAGATTTCATGATCGTTTTCTTCGGATGGCCAAGCAAT
CTTTTGATTTTAAAGGACTTCAATTCGCGGCGCTTTCGAGCGCTCACACA
CTTTTTACTGGTGAGAGCGTACATGCTAATGATATACTCCATTGTATTTA
TCACTCCGCATAAGAATAATATCTTCGTTCCGCTTTTTGCCATCATCATG
ACCATCGATGTGTATGTCATTAAATTAGATATGAAGCGACGTGGATTGAT
GCCTCTGGAGCGCAGTGTGCCCCCCCTATGGGAAATATTGATCAGCTTGT
GCTGTGTTGTTGCCGGGCAATGGCTGCTCAAGTATTTGATCTTTCATGCA
AGCTTTCTAGACCAT
FMO04367.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32588-RA | 677 | CG32588-RA | 77..591 | 33..547 | 2545 | 99.6 | Plus |
| CG43075-RA | 757 | CG43075-RA | 78..473 | 37..417 | 565 | 76.8 | Plus |
| CG33252-RA | 819 | CG33252-RA | 100..432 | 44..361 | 445 | 76 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15205893..15206090 | 547..350 | 990 | 100 | Minus |
| X | 23542271 | X | 15206394..15206560 | 199..33 | 820 | 99.4 | Minus |
| X | 23542271 | X | 15206169..15206319 | 349..199 | 740 | 99.3 | Minus |
| X | 23542271 | X | 15220940..15221099 | 196..37 | 425 | 84.4 | Minus |
| X | 23542271 | X | 16896936..16897088 | 196..44 | 300 | 79.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:20:26 has no hits.
FMO04367.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:19:16 Download gff for
FMO04367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32588-RA | 71..595 | 27..553 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:47:31 Download gff for
FMO04367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32588-RA | 71..595 | 27..553 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:07:49 Download gff for
FMO04367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32588-RA | 71..595 | 27..553 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:07:49 Download gff for
FMO04367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15206169..15206318 | 200..349 | 99 | <- | Minus |
| X | 15206394..15206566 | 27..199 | 97 | | Minus |
| X | 15205889..15206090 | 350..553 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:19:16 Download gff for
FMO04367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15099922..15100123 | 350..553 | 98 | <- | Minus |
| arm_X | 15100202..15100351 | 200..349 | 99 | <- | Minus |
| arm_X | 15100427..15100599 | 27..199 | 97 | | Minus |
