FMO04369.5prime Sequence
1236 bp (917 high quality bases) assembled on 2008-07-30
> FMO04369.5prime
CGTATAGCATACATTAAACGAAGTTATCAATCGACATGGCGTCACAAGGT
TCCGGAGATATGAAGACCTCAAGGCTGGCGCAAATGCAGATGCGTTTCCA
GCAGCGCACGCAACAGGAGCAGGAGGTGCGTACGCGGGAGCTGATGAGCA
CGAAGTCAAGTGCCGAGAACCTGGCCACTGGAGCACCCAGTGCCGCCACC
ACCAGGTTGATCGGGAATGGGAAAGTGCGCCAGATGTTCGACGAGCGCCG
CCGCGGGGCGGGCATTGATCGCAGCAATCCCCTCAAGCCGATCGGCACTC
TGCCCTCGCCACCCGCCCAAACAAAATCTCGCCCGCAGCCCCCAATGCAG
CGTCTCGTCAAGGGCGTGGCCGACTTGACCATGCGGGATGCACCAAATGC
ACCAGGCAGGAGGATCACTAGTGACAACAATAACAATAAGTTCGCCACGC
CCCGCGGGACTTTGAATCGCAACCTTAAGCCCGTGGTCACCCGCAAGACA
CCGCCGGCCCAGGAGACCACGCTCCACCAACGTTCTCCCGCGCCACAACG
CAGTCCCAAGATTCAGGCGACCCAACGAGTAAGTGGAGGAACCGGTGCTG
CCCCGACAGCCGGTCGTCTTTCGCCACCATTTGTTCGACGGGCGGAACCC
AAATCACCAGTTAAAAAGGTCAACATGGACACAACGACTGCAATCCCAGA
GGGCACCGCTTTATGCCGCTACTGCGGACGCCACTTCAACACGGATCGTC
TGGCGAAGCACGAGGAGGTGTGCCAGCGCATGCTGACCACCAAACGCAAG
ATATTCGATGCCTCCAAGCAGCGGATCGAGGGCACCGAGGCCGCGGCGTT
CAATATGAAGTCGAAAGGCCAATCGCAACCGTTCAACTTACAGTAGTGCT
GCCCAGCAGAAGGTCTGACCACTGGAGTGAAGAAGAACACTGGCGTAGAG
CACGAGGACTTCATTCAGTCGATTACAGCGGTCAAGCAAGTGAAGCTGAC
TGGCGCGCGGCGGCAAGCTGAGCGACTGCACCACCGCCACTTTCGGAGAA
TCAAAACTATGTCCAGGTGTCCCACTGTGGTGCCCGATTCAACGAAACAA
GGCTGCGTAACGTTCATATTCTTATGGTGCGTTAACTAGGTTGTCCAAAC
ACCCCGGTATACGTCTGCAGACAGAGGACGTGGCAGCTTTCTAGACATTC
TGTGCTGGCGCGGCGGCCTCTGGAAGTAGGTGCTCT
FMO04369.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42675-RF | 1834 | CG42675-RF | 621..1708 | 36..1119 | 4875 | 97.3 | Plus |
| CG42675-RC | 1765 | CG42675-RC | 552..1639 | 36..1119 | 4875 | 97.3 | Plus |
| CG42675-RB | 1688 | CG42675-RB | 475..1562 | 36..1119 | 4875 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5817513..5818068 | 87..642 | 2750 | 99.6 | Plus |
| 3R | 32079331 | 3R | 5818248..5818674 | 677..1096 | 1480 | 93 | Plus |
| 3R | 32079331 | 3R | 5815230..5815283 | 36..89 | 270 | 100 | Plus |
| 3R | 32079331 | 3R | 5818151..5818188 | 641..678 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:55:35 has no hits.
FMO04369.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:21 Download gff for
FMO04369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42675-RB | 466..1562 | 28..1119 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:44:46 Download gff for
FMO04369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10999-RB | 543..1639 | 28..1119 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:35 Download gff for
FMO04369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42675-RB | 466..1562 | 28..1119 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:35 Download gff for
FMO04369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5815221..5815283 | 28..89 | 93 | -> | Plus |
| 3R | 5817516..5818067 | 90..641 | 99 | -> | Plus |
| 3R | 5818152..5818187 | 642..677 | 100 | -> | Plus |
| 3R | 5818249..5818694 | 678..1119 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:21 Download gff for
FMO04369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1643971..1644416 | 678..1119 | 93 | | Plus |
| arm_3R | 1640943..1641005 | 28..89 | 93 | -> | Plus |
| arm_3R | 1643238..1643789 | 90..641 | 99 | -> | Plus |
| arm_3R | 1643874..1643909 | 642..677 | 100 | -> | Plus |
