FMO04371.5prime Sequence
1236 bp (1059 high quality bases) assembled on 2008-07-30
> FMO04371.5prime
TCGTATAGCATACATAATACGAAGTTATCAGTCGACATGCAAAAACTGCG
CAGTTTGTTTCTCAGGAAATCAGCCCATACAAATCGCCCAGGTAGCTCTA
CTTCTGGCGAGGCAGACGATGCCAGCAGGCCAGGTGAATCTATCCTGGTG
CGGGTAATCTGCCCCAGCTCTCGGGTTCTTATCTTCAAAACGGACGTTAA
TAAGCGCCTAAACGAGCTGAAGAGTGAGGTGATTCTGGAACTGAGCGACG
ATCCCGACTCCATCCAGCTATTTGCCCCAGATGTGCGGCATCTTAATCCG
CGATACCGTCTCTATCGGGCGGAATACTTCGGCGGCGAGCTTAACGAGGG
CGACACGCTGGCCCAGCTAAAAGTTCGCAACAATGAGACTTTTATACTCT
CTCCACGACGCAATACTCTGCCGCAGACTGTTTCACGGATACGTGAGGTT
CCTGGCCCAAATGAGCAGCTGGTGGAGAGCGCCACCCGATACGTGCCCGT
CAATTGCAACCAGCTGCCCACCATCGATATTAATGAAATCTTTCAGCAGT
CGAATATCCAATACGATGTGCGAAAGGTGTTGATCTCTTTGGCTCAAGCT
TCTGCGGCGGTTATAGGAGCTGGCCCTTATGCTCCACGCCTGATAGCTAT
GCTAAAGCAACGTTTGATCAATCGCCGAAATCAGCAAGCGGATACGCTGC
AATGCCTCGTGGACATGGGCTTCAAGCGGGAGCTAGCCGCATTTGCCTTA
AAAGCACACAATGGCATTTACTCGACCACGATGGAGTGGCTAATACAGAA
CCAAAACGAGGAAAATCCACAGGAACCGCCGGGCATGAATATGCAGCACA
GTCTATCTTCCATCTCACCCTCCACGATTGTCACCAATAATGAAACCATT
GAAAACACTGCTGCCTTGATTGAGATTGTACGAATCTACAGCCACCGGGA
TTCCCCTCCCAGCGATGAGATTGTAGAATCGCTTACAGAATGGGCTTCGA
GAGACGCAGTGCTTGCGGCGCTGAAGATACTGGCACAACAGGCGTCCGCG
GGCGAATGGTGGTGCGACATCGATCGGGTAGCGTTATTGACCTGCTGAGC
TTGCCGCCCGGATCGCCCATCCTAAAGGGGATTCTGAAATGCCCAAGGTC
AGAAGAACCTTAAGCAATCAGACCTTTTGGCATTTCTGGCACTCTGGGAC
AGACACACATGCATATTCCGTGTGCGCGTTGCCACC
FMO04371.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| isopeptidase-T-3-RB | 1778 | CG11025-RB | 105..1272 | 37..1189 | 5165 | 96.9 | Plus |
| isopeptidase-T-3-RC | 2491 | CG11025-RC | 533..1683 | 54..1189 | 5080 | 96.9 | Plus |
| isopeptidase-T-3-RA | 2479 | CG11025-RA | 533..1671 | 66..1189 | 5020 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19671359..19671850 | 64..555 | 2430 | 99.6 | Plus |
| 2R | 25286936 | 2R | 19671906..19672242 | 556..892 | 1685 | 100 | Plus |
| 2R | 25286936 | 2R | 19672294..19672548 | 892..1136 | 630 | 91.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:07:35 has no hits.
FMO04371.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:33 Download gff for
FMO04371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| isopeptidase-T-3-RB | 105..1281 | 37..1197 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:47:28 Download gff for
FMO04371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| isopeptidase-T-3-RB | 105..1281 | 37..1197 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:22 Download gff for
FMO04371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| isopeptidase-T-3-RB | 105..1281 | 37..1197 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:22 Download gff for
FMO04371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19671267..19671295 | 37..65 | 100 | -> | Plus |
| 2R | 19671361..19671850 | 66..555 | 99 | -> | Plus |
| 2R | 19671906..19672241 | 556..891 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:33 Download gff for
FMO04371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15558772..15558800 | 37..65 | 100 | -> | Plus |
| arm_2R | 15558866..15559355 | 66..555 | 99 | -> | Plus |
| arm_2R | 15559411..15559746 | 556..891 | 100 | -> | Plus |
