FMO04374.5prime Sequence
1222 bp (1017 high quality bases) assembled on 2008-07-30
> FMO04374.5prime
CATACATTATACGAAGTTATCAGTCGACATGCCATGGTTTGGCATGGACA
TCGGCGGAACCCTCACCAAGCTGGTCTACTTCGAGCCCAAGGACATAACG
CCGGATGAGCAGGATCGCGAGGCTGGCATTTTGCGGAATATCCGACGCTA
CTTGACCAAAAACTCGGCGTACGGCAAAACCGGACATCGTGATACGCACC
TACAGATGGACAATGTCGAGATACGCAAAAGACGCGGCTCCTTGCATTTC
ATTCGCTTCCAGACCACGGACATGGGCAACTTCCTATCGCTTGCCAAGCA
GAAGGGCATGGCCGAGCTGGTGACCACGGTTTGTGCCACCGGCGGTGGCG
CATTCAAGTTCGAGCAGGATTTCCGCGACCAAGTCAACATGAAGCTGGCT
AAATTCGACGAGCTGGACACGCTCATCAAAGGCATTCTTTTCGCCGATCT
GCATAATCGCACGGAGTGCTACTACTACGAAAACGCACGTGACATTCTAA
AAAGCGAAAAGCAGCAGTTCAATTTCTCTCAACCGTTTCCGTTTATTCTG
GTGAACGTCGGATCCGGAGTCTCCATCCTGGCGGTCTACGGTCCCGACAA
CTACAAGCGGATTTCGGGCACGAGCTTGGGCGGCGGTACATTCCTCGGCC
TGTGTTGTCTACTCACCGGCTGCACATCCTTCGAAGAGGCCATCCAACTG
GCCACCAAGGGTGACAATAGGAAGGTGGACAAGTTAGTTAAGGACATTTA
TGGTGGCGATTACAACCGCTTTGGTCTCCCCGGCGATTTGGTGGCGTCAA
GCTTTGGCCAGATGCACCTCAACGACAAACGGGTTTCCGTATCACGCGAA
GATCTGGGCAACGCCACTCTGGTCACCATAACGAATAATATCGGCTCATA
GCAAGGGATGTGCGCGCTGAATGAGAAGATCGATAGGGTCGTCTTTGTGG
GCACTTTTCTGCCGAGTTAACCCCATTTCCATGAGGCTGCTGGCGTACGC
AATGGAGTTCTGGTTCGATTGCAACATGAAGGGTCTTTCACTGGGAGCAC
GAGGATACTTGGGGCTCTGGATGCCTGCCTGCAGTCACGGGCGAGCCTGG
CAGCGCCCTTAACGACGAATGGACATTCAATCCACACTGAAATCGATTCA
CAGGCAGTCACCATGAATCTTTCTACGTGCGGACAGATCCTCACTAGATA
TAGGGTGCTCACTCATACAGGC
FMO04374.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fbl-RG | 2352 | CG5725-RG | 416..1540 | 29..1150 | 5040 | 97.2 | Plus |
| fbl-RE | 2386 | CG5725-RE | 450..1574 | 29..1150 | 5040 | 97.2 | Plus |
| fbl-RC | 2093 | CG5725-RC | 157..1281 | 29..1150 | 5040 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20389913..20390208 | 203..498 | 1465 | 99.7 | Plus |
| 3L | 28110227 | 3L | 20390456..20390634 | 623..801 | 895 | 100 | Plus |
| 3L | 28110227 | 3L | 20388671..20388847 | 29..205 | 885 | 100 | Plus |
| 3L | 28110227 | 3L | 20390268..20390393 | 499..624 | 630 | 100 | Plus |
| 3L | 28110227 | 3L | 20390688..20390827 | 800..939 | 575 | 97.2 | Plus |
| 3L | 28110227 | 3L | 20390885..20390985 | 937..1038 | 340 | 91.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:48:26 has no hits.
FMO04374.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:58 Download gff for
FMO04374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fbl-RC | 155..1287 | 25..1155 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:29:00 Download gff for
FMO04374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fbl-RD | 56..1194 | 17..1155 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:52 Download gff for
FMO04374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fbl-RC | 155..1287 | 25..1155 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:52 Download gff for
FMO04374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20388669..20388847 | 22..205 | 97 | -> | Plus |
| 3L | 20389916..20390208 | 206..498 | 99 | -> | Plus |
| 3L | 20390268..20390393 | 499..624 | 100 | -> | Plus |
| 3L | 20390458..20390634 | 625..801 | 100 | -> | Plus |
| 3L | 20390690..20390825 | 802..937 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:58 Download gff for
FMO04374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20381769..20381947 | 22..205 | 97 | -> | Plus |
| arm_3L | 20383016..20383308 | 206..498 | 99 | -> | Plus |
| arm_3L | 20383368..20383493 | 499..624 | 100 | -> | Plus |
| arm_3L | 20383558..20383734 | 625..801 | 100 | -> | Plus |
| arm_3L | 20383790..20383925 | 802..937 | 97 | -> | Plus |
