FMO04375.5prime Sequence
1251 bp (1010 high quality bases) assembled on 2008-07-30
> FMO04375.5prime
ACATTATAGGGAAGTTATCAGTCGACATGGAGAAGAGCACACTGAAGATC
AATAATGAGGACCGGCAGAATTTTGTGGCCACACGGATGAGTCTGCCGCT
CTTTTTCGTGTCCCGCAATCGTATTAGAAAGGAAAATTTACCGCGAGTGG
AGAAGCAATTTAAGTTGGCCGAAAACAGACGAGAGGCCTTCAGCAAAGCC
ACCTTTGATCACTACCGCCACATTACGGGTTTCGACAAGACGCCAAAGAA
TCCGTATCCGGAACGTCGAAGGCTACACATCGATCGGAGTATGACCAAAT
GGAGGGGCTGGCAACTGCCCCCAAATCATTACGGAGTGCCCCCGGAACCG
TATCTCCGACTGAAGGGCACCAAGGGCTCCGTATTCGCCAAGCCGCACAC
GAATCATAGTCGCGTCTCCATTAAACCACCGCCATATCATTTTTACGAAC
TTCCGGCGGAAATCGAGAGGCTCTTCAAGCGCCCGAACTTGCAAAAGGGT
ATCTTCCTTTCAAATGCCCGCGATCGTCGACCGACCACACACGCCATGAT
TTCCAATCTGTCTGGCTGCTGGCGTAATCCCAAGGATGCCGGTCCCTGCG
ACACCCATACAAACATCTTTGAGTTGGCCGCAAATGCTGTACCCGTCACA
AAGGCGCCACGCCCTAATCCGCACCTGTTTCTGCGCCACTCCTGTGTGCC
CACCAAGCCCAATCGACTGATCCGACGCCATATCAGCATGGAACCGGCTC
CAGGTCGCTACTGCACCAGTTATCCGAATGTGTGTCCCTGTCCGTCTGGT
AAGACCAGTGTGCCGGGACTACAGCTGATGATTGATGACCAGAAGCCGCC
TGAAGTTTCCCCGCCTGCCATTTGAAAGGATCAGTCGAAAGCGACTCTGT
GAGCCGGATTGGCCGCATGTCGAGGGCCAAGGCCATCGTCATGTCTTTCT
AATGGGACGCAAAGATAGAACCCAAGCCCCATCAGAATCCTACTTTCTTC
CAAAAAGCAGGGCAGGCCGATAAGCATTGTAATGCCGACTTTCTAAGTAA
CATATACAATGCTGAGAGCAAGCACAAGCGAACATCCACTATTGCGTTCA
GGGCGATTTCAGTTTCTTCGAAAGGTGACCCAAGGATCAACTACCACGTG
TGCAGCCAAGGCGGGTGATATCGAAGCAATGGAACCTCAGAGATTCGCCC
TCTATATGTGCCAGGACGCGATGAGTAAGGGAGTAGTGGCAACAGACACA
C
FMO04375.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:01:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13870-RB | 1921 | CG13870-RB | 64..1189 | 25..1169 | 4760 | 95.5 | Plus |
| CG13870-RA | 1811 | CG13870-RA | 240..1219 | 171..1169 | 4060 | 95 | Plus |
| CG13870-RA | 1811 | CG13870-RA | 64..210 | 25..171 | 705 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:01:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20344650..20345160 | 514..1027 | 2255 | 97.3 | Plus |
| 2R | 25286936 | 2R | 20344195..20344537 | 171..513 | 1715 | 100 | Plus |
| 2R | 25286936 | 2R | 20343908..20343998 | 25..115 | 425 | 97.8 | Plus |
| 2R | 25286936 | 2R | 20344056..20344112 | 115..171 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:01:10 has no hits.
FMO04375.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:14 Download gff for
FMO04375.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13870-RB | 56..1063 | 16..1027 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:44:49 Download gff for
FMO04375.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13870-RB | 56..1063 | 16..1027 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:33 Download gff for
FMO04375.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13870-RB | 56..1063 | 16..1027 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:33 Download gff for
FMO04375.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20343900..20343997 | 16..114 | 93 | -> | Plus |
| 2R | 20344056..20344112 | 115..171 | 100 | -> | Plus |
| 2R | 20344196..20344537 | 172..513 | 100 | -> | Plus |
| 2R | 20344650..20345160 | 514..1027 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:14 Download gff for
FMO04375.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16231405..16231502 | 16..114 | 93 | -> | Plus |
| arm_2R | 16231561..16231617 | 115..171 | 100 | -> | Plus |
| arm_2R | 16231701..16232042 | 172..513 | 100 | -> | Plus |
| arm_2R | 16232155..16232665 | 514..1027 | 97 | == | Plus |
