FMO04376.5prime Sequence
1194 bp (984 high quality bases) assembled on 2008-07-30
> FMO04376.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGGCTTCCCAGAGTAA
GAACAGTGGGTTGACCAACAAGGTGACCACGGTGGTGGCCACCAATGCCT
TCGGCGCTGATGTGATGAGCGAGATCAGCTACACGGACGCGAAAGTTGTG
GGCAATGGCAGCTTCGGCGTGGTCTTCCAGGCCAAAATGGTGCCCAGCAA
CGAAATGGTGGCCATAAAGAAGGTCCTGCAGGATCGGCGCTTCAAGAATC
GGGAACTGCAAATCATGCGCAAGCTGCGCCACGATAACATCATCACTCTC
AAGTGGTTCTTCTTTTCAAGTGGCGAGAAAAGGGACGAGGTCTATCTGAA
CCTGGTCATGGAGTTCTTGCCGGAGACGCTGTATAAAGTGGAGCGACAGT
ACGCAAGGGCAAAGCAAACCTTGCCAGTTAACTTTGTCCGACTTTACATG
TACCAGCTGCTGAGGAGCATGGGATATCTCCACAGCTTGGGATTCTGTCA
CAGGGACATCAAGCCGCAGAACATGCTGCTCGATTCGGAGACGGGTGTGC
TTAAGCTCTGCGATTTCGGCAGTGCCAAGCAGCTGATCTCCGGCGAACCC
AATGTCTCGTACATCTGCTCAAGGTACTATCGTGCGCCTGAGCTAATTTT
TGGCTCCACTGACTATACCACCAAGATCGATATGTGGAGCGCCGGGTGTG
TGATGTCAGAGTTGCTGCTGGGCCAGCTCATCTTTCCCGGGGACTCGGGA
GTGGACCAGATTGTAGAGATCGTCAAGGTTATGGGCACTCCCACCTCGGA
GCAGCTCCATGACATGAATCCGCATTACAAGCAGTTCAAGTTGCCGGAAC
TGAAGCCGCACCCCTGGTCCAAGTGTTCAGGATTCGCACACCGGCGGAGC
CATAGATCTGGTCTCCAAGATGCTGATATACTCGCCCAATGCCAGGGTTC
TCGTTGATGGGCTGTGCCCATCCGTTCTTCGACGACTTCGTCAGATCAAC
ACCAGCAGTTGCCCAACGCAGAGCTAGCAGCTCGCTGTTTACCTTTACCT
GACTATGATAAACCATCGAGCGGAAACAATGCGCTGCTTCTGCCCGGGCT
CAGGGTCAGCACACCAAGGACAGTGCTGCCAAGGAACCGAATACTGGTAG
GAGCTTGGAACGGAGAGCCAACCGGGCCAGCAGGCTCTCTCTTA
FMO04376.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gskt-RA | 1772 | CG31003-RA | 136..1265 | 34..1144 | 4970 | 97.2 | Plus |
| sgg-RR | 5004 | CG5-RR | 1456..1832 | 412..788 | 505 | 75.9 | Plus |
| sgg-RQ | 4499 | CG5-RQ | 2658..3034 | 412..788 | 505 | 75.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31372562..31373552 | 34..1018 | 4630 | 99 | Plus |
| X | 23542271 | X | 2671374..2671545 | 508..679 | 335 | 79.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:34:03 has no hits.
FMO04376.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:37:31 Download gff for
FMO04376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gskt-RA | 127..1235 | 25..1120 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:41:57 Download gff for
FMO04376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gskt-RA | 127..1235 | 25..1120 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:41 Download gff for
FMO04376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gskt-RA | 127..1235 | 25..1120 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:41 Download gff for
FMO04376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31372553..31373661 | 25..1120 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:37:31 Download gff for
FMO04376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27198275..27199383 | 25..1120 | 97 | | Plus |
