FMO04377.5prime Sequence
1153 bp (1036 high quality bases) assembled on 2008-07-30
> FMO04377.5prime
TAGCATACATTATACGAAGTTATCAGTCGACATGAAGTCGATTCAGGCCC
GGTTGAACCACCGATTCCGAAAAACTTTGGCGATGGACAAGCCGTCTAGC
AGCAATAGCAATCGAATGAGCAGGAGCACTTCGAACTGCAGGAGCCCGGC
CATAATACGCAGTCCGCTGAACTCTGAGGAATTTCAGGACTCGGCAACGG
CAGCCGCCACACAACAACGGCTTTTCTGGAGCGGCCAGCGGGCCTCGACG
GCGGGCAGGGATGATAAAACCAAGCCTGATTCGACTGCCGCCGGAAAAAA
GAAGCCACCTACGACGACAAGGCAGTCAAATTTTACCCAGACCGAACGAA
GACGGACACATCGCAAGCTGAGTCCGCGGAGCACGCGTTGCAATTCGGTG
GCAGTTACGGCGCTGGTCAGCAGAGAAAATATACCGCAAACATCCGGTAA
GCGCGGAAAAAAAACTCCGAGCCACCGGAGCACACTAATAAGTACTCCAT
CGAAAACACTACAATTAAAAACGGCCGCAGGGTACAGAAGGCCAGAGGAC
CTAACCGCCCGGTGCAGTGCGTCGCACGAGGGGCGCAAGCTTCTGCAGGA
GCGGCTGATGGTGCGGGTGGACGCACTGTTCAACATGCTCTTCTCTGCCT
CGCCGTTCCTGCAGAGCTTCCATGAGCGGCGCAAGTCCACCGATCTGAAT
ATGGGCGTCTGGGCGCGAAATGCCGGCGGCCAGAATCAGCGCACTGTCTC
AATGACTGTGGCACTTCAGGCGAACGTTGGTCCCAAAACTGCCAAAATTA
CCGAGACACAGACCATGCGCGAGTGCAGCCAACCCGGCCAACTGTACTCG
ATCGATGTGCAGAGCGTTAACGCAGATATCCCCTACGCGGACACCTTCGT
CGTCCTGATGCACTTCTGCCTGAAGGCCACCGGTGGAGAGCACACGGACG
TTTTGGTCTTTGCCGAGATCAGTTTCTCAGTCCGTGGTGGGCAGTTGTCA
AGACCTTTATCGAGAGGAACGCGTACGCGGGTCTCGAGCAGTTCTGTCAT
CTCTTATCAGCGCCTACTGATGAGATTAGCAGATGCCAGCCTTTCTGGAA
CATTCGTTTGGCGGCCGGCAGGTAAGTGTCCTAATCTATCGTAATTATCT
ATC
FMO04377.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30284-RA | 1180 | CG30284-RA | 77..1128 | 32..1079 | 4995 | 98.9 | Plus |
| CG30284-RB | 1083 | CG30284-RB | 478..1031 | 530..1079 | 2505 | 97.8 | Plus |
| CG30284-RB | 1083 | CG30284-RB | 64..479 | 32..447 | 2080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21650905..21651923 | 1049..32 | 4880 | 98.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:06:20 has no hits.
FMO04377.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:19 Download gff for
FMO04377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30284-RA | 77..1135 | 32..1085 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:49:44 Download gff for
FMO04377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30284-RA | 77..1135 | 32..1085 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:48 Download gff for
FMO04377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30284-RA | 77..1135 | 32..1085 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:48 Download gff for
FMO04377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21650905..21651923 | 32..1049 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:19 Download gff for
FMO04377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17538410..17539428 | 32..1049 | 99 | | Minus |
