Clone FMO04378 Report

Search the DGRC for FMO04378

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:43
Well:78
Vector:pMK33-CFH-BD
Associated Gene/TranscriptOscp-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO04378.5prime Sequence

432 bp (432 high quality bases) assembled on 2008-07-30

> FMO04378.5prime
TCGTATAGCATACATAAAACGAAGTTATCAGTCGACATGGCCACCGCTCT
GAAGGAGGCATCCGAGAAGCTCCGCTTCGCCCCGGCCACCGTCAATCTGT
TGGGTCTGCTGGCTGACAACGGACGTCTAAAGAAGCTGGACACCGTGATC
AATGCCTACAAGACCATCATGGCCGCACATCGCGGTGAGGTCGTCTGCGA
GGTGGTCACCGCCAAGCCCTTGGATGCGTCCCAGAGCAAGCAGCTGGAGG
GTGCCCTTAAGTCTTTCCTGAAGGGCAACGAGTCTCTGAAGATCACTTCC
CGCGTGGACCCCAGCATCATTGGTGGCCTGATCGTTTCCATTGGCGACAA
GTACGTCGACATGAGCATTGCCACTAAGGTCAAGCTCTACACCGATGTCA
TCCAGACCGCTGCCGCAAGCTTTCTAGACCAT

FMO04378.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:34
Subject Length Description Subject Range Query Range Score Percent Strand
Oscp-RA 802 CG4307-RA 319..697 36..414 1895 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15266145..15266370 36..261 1130 100 Plus
3R 32079331 3R 15266431..15266585 260..414 775 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:48:33 has no hits.

FMO04378.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:02 Download gff for FMO04378.5prime
Subject Subject Range Query Range Percent Splice Strand
Oscp-RA 315..697 30..414 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:49:45 Download gff for FMO04378.5prime
Subject Subject Range Query Range Percent Splice Strand
Oscp-RB 375..757 30..414 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:55 Download gff for FMO04378.5prime
Subject Subject Range Query Range Percent Splice Strand
Oscp-RA 315..697 30..414 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:55 Download gff for FMO04378.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15266141..15266370 30..261 98 -> Plus
3R 15266433..15266585 262..414 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:02 Download gff for FMO04378.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11091863..11092092 30..261 98 -> Plus
arm_3R 11092155..11092307 262..414 100   Plus