FMO04379.5prime Sequence
1231 bp (1035 high quality bases) assembled on 2008-07-30
> FMO04379.5prime
CGTATAGCATACATTAAACGAAGTTATCAGTCGACATGCTGCGTGCCGTG
GAGAAGAAGATACTGTCGTACGTGAAGCTGCCCTACCGCGGCTTCTTCGT
GGATATCGGGCCGGCGGTGGGCGAAGCGGATAAGATCTGGACCATCAGCA
TGAATACCGAGTCCAAGGAGGTGCCGCTGGTGCTCCTGCATGGCCTGGGC
GCAGGCATTGCCCTGTGGGTGATGAACCTCGATGCCTTTGCCAAGGGCCG
ACCAGTATACGCCATGGACATCCTCGGATTCGGTCGCAGCTCTCGGCCGC
TGTTCGCCAAGGATGCGCTGGTGTGCGAGAAGCAATTTGTGAAATCGGTG
GAGGAGTGGCGGCGCGAGATGAACATCAACGACATGATTCTGTTGGGCCA
CTCGATGGGCGGCTTCATTGCCTCCAGCTACGCCCTCTCACATCCGGAGC
GTGTGAAACACCTCATACTGGCCGATCCCTGGGGCTTCCCCGAGAAGCCC
TCGGATTCGACCAACGGCAAAACAATACCGCTCTGGGTGCGGGCCATAGC
TAGAGTACTGACCCCGCTAAATCCGTTGTGGGCTCTCCGCGCCGCCGGAC
CCTTTGGCCAGTGGGTGGTGCAAAAGACGCGGCCAGACATTATGCGAAAG
TTCCAGAGCACCATCGAGGAGGATATCAACTTGCTGCCGCAGTACATACA
CCAGTGCAATGCGCAGAATCCCAGCGGTGAGTCCGCCTTCCACACAATGA
TGCAATCCTTTGGATGGGCCAAGCACCCCATGATTCACCGCATCAAGGAC
GTGCGCAGCGACATACCAATCACGTTCATCTACGGCTCCCGTTCGTGGAT
CGACTCGTCGTCGGGGGAGAAGATCAAGTCGCAGCGCGGCAGCAATATGG
TGGACATCAAGATCGTGACGGGCGCCGGCCACCACGTATATGCCGACAGC
CGGACGTGTTCACCGCTACGTGAACGAGACCTGTGATATGTACAAGTGCC
CGGTGTCAGCTGATAACGCCCCTGCACGCTAATCCGCGATCCACCGAGTC
CGACGCGAGCGCGAGCCCAGCCTGAGCAAGCGAGACGTCCGAGGTTCAGC
CGAAGTCAGCCCGTTCCAACCCTGTTCCCGAACCCGACCATCCCACGCCG
ACCGCGAAGAACTTGGGCACTCAACGAAGGCAAGCTTCTTGAACATTCTT
TGGGCGCGCGGAGCCAGGATGATGAGTACAC
FMO04379.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1882-RG | 2695 | CG1882-RG | 556..1694 | 36..1163 | 5090 | 97.3 | Plus |
| CG1882-RF | 1756 | CG1882-RF | 358..1496 | 36..1163 | 5090 | 97.3 | Plus |
| CG1882-RE | 1668 | CG1882-RE | 270..1408 | 36..1163 | 5090 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7813347..7814394 | 36..1078 | 4835 | 99 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:42:54 has no hits.
FMO04379.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:41 Download gff for
FMO04379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1882-RB | 178..1234 | 27..1078 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:44:50 Download gff for
FMO04379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1882-RD | 285..1341 | 27..1078 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:47 Download gff for
FMO04379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1882-RE | 261..1317 | 27..1078 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:47 Download gff for
FMO04379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7813337..7814394 | 23..1078 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:41 Download gff for
FMO04379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3700842..3701899 | 23..1078 | 98 | == | Plus |
