Clone FMO04381 Report

Search the DGRC for FMO04381

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:43
Well:81
Vector:pMK33-CFH-BD
Associated Gene/Transcriptp53-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO04381.5prime Sequence

970 bp (945 high quality bases) assembled on 2008-07-30

> FMO04381.5prime
CGAAGTTATCAGTCGACATGAGTCTTCACAAGTCCGCGTCGTTTAGCTTG
ACTTTTAACCAAAACACTTCGATTGTTTCGCGTAGCAATAGTCGCACAAT
TTTTGAAGCTTTCAAGGAGTTCCTGGATTTTTGGGATATCGGCAACGAAG
TTTCTGCAGAGTCAGCAGTTCGGGTCTCCAGCAACGGAGCTTTCAACTTG
CCGCAGAGTTTTGGCAACGAATCCAACGAATATGCCCACCTGGCTACGCC
TGTGGATCCAGCCTACGGAGGCAACAACACGAACAACATGATGCAGTTCA
CGAACAATCTGGAAATTTTGGCCAACAATAATTCCGATGGCAATAACAAA
ATTAATGCATGCAACAAATTCGTCTGCCACAAGGGCACTGATTCCGAGGA
TGACTCCACGGAGGTCGATATCAAGGAGGATATTCCGAAAACGGTGGAGG
TATCGGGATCGGAATTGACCACGGAACCCATGGCCTTCTTGCAGGGATTA
AACTCCGGGAATCTGATGCAGTTCAGCCAGCAATCCGTGCTGCGCGAAAT
GATGCTGCAGGACATTCAGATCCAGGCGAACACGCTGCCCAAGCTAGAGA
ATCACAACATCGGTGGTTATTGCTTCAGCATGGTTTCTGGATGAGCCGCC
CAAGTCTCTTTGGATGTACTCGATTCCGCTGAACAAGCTCTACATCCGGA
TGAACAAGGCCTTCAACGTGGACGTTCAGTTCAAGTCTAAAATGCCCATC
CAACCACTTAATTTGCGTGTGTTCCTTTGCTTCTCCAATGATGTGAGTGC
TCCCGTGGTCCGCTGTCAAATCACCTTAGCGTTGAGCCTTTGACGGCCAA
TAACGCAAAAATGCGCGAGAGCTTGCTGCGCACGAGATTCCCACAGTGTA
TTTGTGGAAATGCTCCAGGGCAAGGAATTTCCAAACGTTTTTCCGTTGAG
TCCCTCTGAACATGAACCGG

FMO04381.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:06
Subject Length Description Subject Range Query Range Score Percent Strand
p53-RB 1870 CG33336-RB 74..1031 17..970 4525 98.6 Plus
p53-RC 2095 CG33336-RC 667..1256 385..970 2685 97.8 Plus
p53-RA 1577 CG33336-RA 149..738 385..970 2685 97.8 Plus
p53-RC 2095 CG33336-RC 74..442 17..385 1845 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23053582..23053905 385..62 1620 100 Minus
3R 32079331 3R 23050815..23051127 840..528 1470 99.4 Minus
3R 32079331 3R 23053118..23053200 467..385 415 100 Minus
3R 32079331 3R 23050617..23050750 970..841 320 89.6 Minus
3R 32079331 3R 23053965..23054009 61..17 225 100 Minus
3R 32079331 3R 23053012..23053048 503..467 185 100 Minus
Blast to na_te.dros performed on 2014-11-28 21:45:05 has no hits.

FMO04381.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:56 Download gff for FMO04381.5prime
Subject Subject Range Query Range Percent Splice Strand
p53-RB 70..1031 10..970 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:47:37 Download gff for FMO04381.5prime
Subject Subject Range Query Range Percent Splice Strand
p53-RB 70..1031 10..970 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:57 Download gff for FMO04381.5prime
Subject Subject Range Query Range Percent Splice Strand
p53-RB 70..1031 10..970 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:57 Download gff for FMO04381.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23050617..23050750 841..970 91 <- Minus
3R 23050815..23051124 531..840 99 <- Minus
3R 23052922..23052948 504..530 100 <- Minus
3R 23053012..23053048 467..503 100 <- Minus
3R 23053119..23053199 386..466 100 <- Minus
3R 23053582..23053905 62..385 100 <- Minus
3R 23053965..23054013 10..61 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:56 Download gff for FMO04381.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18876339..18876472 841..970 91 <- Minus
arm_3R 18876537..18876846 531..840 99 <- Minus
arm_3R 18878644..18878670 504..530 100 <- Minus
arm_3R 18878734..18878770 467..503 100 <- Minus
arm_3R 18878841..18878921 386..466 100 <- Minus
arm_3R 18879304..18879627 62..385 100 <- Minus
arm_3R 18879687..18879735 10..61 94   Minus