FMO04381.5prime Sequence
970 bp (945 high quality bases) assembled on 2008-07-30
> FMO04381.5prime
CGAAGTTATCAGTCGACATGAGTCTTCACAAGTCCGCGTCGTTTAGCTTG
ACTTTTAACCAAAACACTTCGATTGTTTCGCGTAGCAATAGTCGCACAAT
TTTTGAAGCTTTCAAGGAGTTCCTGGATTTTTGGGATATCGGCAACGAAG
TTTCTGCAGAGTCAGCAGTTCGGGTCTCCAGCAACGGAGCTTTCAACTTG
CCGCAGAGTTTTGGCAACGAATCCAACGAATATGCCCACCTGGCTACGCC
TGTGGATCCAGCCTACGGAGGCAACAACACGAACAACATGATGCAGTTCA
CGAACAATCTGGAAATTTTGGCCAACAATAATTCCGATGGCAATAACAAA
ATTAATGCATGCAACAAATTCGTCTGCCACAAGGGCACTGATTCCGAGGA
TGACTCCACGGAGGTCGATATCAAGGAGGATATTCCGAAAACGGTGGAGG
TATCGGGATCGGAATTGACCACGGAACCCATGGCCTTCTTGCAGGGATTA
AACTCCGGGAATCTGATGCAGTTCAGCCAGCAATCCGTGCTGCGCGAAAT
GATGCTGCAGGACATTCAGATCCAGGCGAACACGCTGCCCAAGCTAGAGA
ATCACAACATCGGTGGTTATTGCTTCAGCATGGTTTCTGGATGAGCCGCC
CAAGTCTCTTTGGATGTACTCGATTCCGCTGAACAAGCTCTACATCCGGA
TGAACAAGGCCTTCAACGTGGACGTTCAGTTCAAGTCTAAAATGCCCATC
CAACCACTTAATTTGCGTGTGTTCCTTTGCTTCTCCAATGATGTGAGTGC
TCCCGTGGTCCGCTGTCAAATCACCTTAGCGTTGAGCCTTTGACGGCCAA
TAACGCAAAAATGCGCGAGAGCTTGCTGCGCACGAGATTCCCACAGTGTA
TTTGTGGAAATGCTCCAGGGCAAGGAATTTCCAAACGTTTTTCCGTTGAG
TCCCTCTGAACATGAACCGG
FMO04381.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p53-RB | 1870 | CG33336-RB | 74..1031 | 17..970 | 4525 | 98.6 | Plus |
p53-RC | 2095 | CG33336-RC | 667..1256 | 385..970 | 2685 | 97.8 | Plus |
p53-RA | 1577 | CG33336-RA | 149..738 | 385..970 | 2685 | 97.8 | Plus |
p53-RC | 2095 | CG33336-RC | 74..442 | 17..385 | 1845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23053582..23053905 | 385..62 | 1620 | 100 | Minus |
3R | 32079331 | 3R | 23050815..23051127 | 840..528 | 1470 | 99.4 | Minus |
3R | 32079331 | 3R | 23053118..23053200 | 467..385 | 415 | 100 | Minus |
3R | 32079331 | 3R | 23050617..23050750 | 970..841 | 320 | 89.6 | Minus |
3R | 32079331 | 3R | 23053965..23054009 | 61..17 | 225 | 100 | Minus |
3R | 32079331 | 3R | 23053012..23053048 | 503..467 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:45:05 has no hits.
FMO04381.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:56 Download gff for
FMO04381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p53-RB | 70..1031 | 10..970 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:47:37 Download gff for
FMO04381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p53-RB | 70..1031 | 10..970 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:57 Download gff for
FMO04381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p53-RB | 70..1031 | 10..970 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:57 Download gff for
FMO04381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23050617..23050750 | 841..970 | 91 | <- | Minus |
3R | 23050815..23051124 | 531..840 | 99 | <- | Minus |
3R | 23052922..23052948 | 504..530 | 100 | <- | Minus |
3R | 23053012..23053048 | 467..503 | 100 | <- | Minus |
3R | 23053119..23053199 | 386..466 | 100 | <- | Minus |
3R | 23053582..23053905 | 62..385 | 100 | <- | Minus |
3R | 23053965..23054013 | 10..61 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:56 Download gff for
FMO04381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18876339..18876472 | 841..970 | 91 | <- | Minus |
arm_3R | 18876537..18876846 | 531..840 | 99 | <- | Minus |
arm_3R | 18878644..18878670 | 504..530 | 100 | <- | Minus |
arm_3R | 18878734..18878770 | 467..503 | 100 | <- | Minus |
arm_3R | 18878841..18878921 | 386..466 | 100 | <- | Minus |
arm_3R | 18879304..18879627 | 62..385 | 100 | <- | Minus |
arm_3R | 18879687..18879735 | 10..61 | 94 | | Minus |