FMO04382.5prime Sequence
1153 bp (1005 high quality bases) assembled on 2008-07-30
> FMO04382.5prime
AGCATACATTATACGAAGTTATCAGTCGACATGGAGGAAGTTGCGGTAAA
GAAGCGCGGCCGACCGTCAAAGGCATCCGTCGGTGGTAAATCTTCAACAG
CGGCGGTTGCAGCAATCTCGCCAGGCATCAAAAAGCGCGGTCGTCCCGCC
AAGAACAAGGGCTCCAGTGGCGGTGGTGGACAGCGGGGTCGCCCACCGAA
GGCGTCAAAAATCCAAAATGACGAAGATCCCGAAGACGAGGGGGAGGAGG
ACGGCGATGGCGATGGCTCCGGCGCTGAGCTTGCAAACAACTCATCACCC
TCGCCGACGAAGGGCAGGGGACGACCCAAGAGCAGTGGTGGCGCCGGATC
AGGATCCGGGGATTCGGTGAAGACGCCCGGTTCCGCCAAGAAGCGCAAGG
CCGGCAGGCCCAAGAAGCACCAGCCCAGCGATAGCGAGAATGAAGACGAT
CAGGATGAGGACGACGACGGCAACAGCAGCATCGAAGAACGTCGCCCAGT
GGGCCGACCGTCGGCTGGATCCGTCAACCTGAACATATCGCGCACGGGAC
GCGGCCTGGGAAGACCCAAGAAGCGGGCTGTCGAGTCCAATGGCGATGGG
GAGCCACAAGTGCCCAAGAAACGCGGTCGTCCACCACAGAACAAGTCGGG
TAGCGGTGGCAGTACTGGCTACGTACCCACCGGTCGTCCGCGCGGTCGTC
CAAAGGCCAATGCTGCACCCGTCGAGAAGCACGAGGACAATGACGACGAT
CAGGACGATGAGAACTCCGGGGAGGAGGAACACAGCTCGCCTGAGAAGAC
GGTAGTGGCGCCGAAGAAACGTGGACGTCTCTCTCTTGCCGCTGGCAAGG
TGTCCAAAGAGGAAACAACAAAGCCCCGTAGTCGCCCAGCGAAAAATATT
GATGACGATGCAGATGATGCTGATTCCGGCCGATCAGGGCCAACACACTC
CAAGAAGGAGTCGAACGACGAGGACGTGCCGTGATGGGACACCAACAAGG
AGATGGCTCAATGGAACTCGATGGCGAAAATGATGCCAACGACGGTATGT
TTCGATAACTACAACGATCGGATCGGTAGCCTGCCGCAGCCTTTCTAGAC
ATTCGTTGGGCGCGGATCAGTAGGTGCATGTCGTATCATATGCATACCTA
GTC
FMO04382.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| D1-RD | 1597 | CG9745-RD | 94..1154 | 31..1080 | 4975 | 98.6 | Plus |
| D1-RA | 1734 | CG9745-RA | 231..1291 | 31..1080 | 4975 | 98.6 | Plus |
| D1-RC | 1811 | CG9745-RC | 308..1368 | 31..1080 | 4975 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9238540..9239173 | 1068..444 | 2650 | 97.8 | Minus |
| 3R | 32079331 | 3R | 9239490..9239904 | 445..31 | 2075 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:33:49 has no hits.
FMO04382.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:28:45 Download gff for
FMO04382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| D1-RC | 299..1372 | 20..1085 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:29:18 Download gff for
FMO04382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| D1-RC | 299..1372 | 20..1085 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:17:08 Download gff for
FMO04382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| D1-RC | 299..1372 | 20..1085 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:17:08 Download gff for
FMO04382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9238522..9239171 | 446..1085 | 97 | <- | Minus |
| 3R | 9239490..9239910 | 23..445 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:28:45 Download gff for
FMO04382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5064244..5064893 | 446..1085 | 97 | <- | Minus |
| arm_3R | 5065212..5065632 | 23..445 | 99 | -> | Minus |
