FMO04383.5prime Sequence
1217 bp (1016 high quality bases) assembled on 2008-07-30
> FMO04383.5prime
TCGTATAGCATACATAATACGAAGTTATCAGTCGACATGCAAAAGCTGGA
CTCTTCGATAAAGGCGAACGACCAGGAAATCGGCGACGTTGACTGTCAGA
TAAAGCTAGACTTCCGGCTTTTGGTACCCAGTTCCTCGATGGATCGGGGA
GAAACCGAGCTACTACTTTCCCTTATAGAAGTGGGACAGAAGCGCATTCT
CATGCACCCGCTTTGCGAAACTTTCCTCTTTCTTAAGTGGCGTCGCATTC
GGAAATTCTTCCTTATGAGCCTTGCGTATCATACGCTTTTCGTGATCCTT
TTCACTTTCTATGTAATTTGGGTGTATGTCCGCTGCTGCAAGAAGGAGGA
GTTGTGCGTGGCTCCAGGTTACGTTTCAACTATTGGATATCTGGTGATCA
TACTAAACCTCATTCTGCTGGGGAAAGAGGTCTTTCAAATGGCACACGGA
CTTCGTGGCTACGCAAAATATTGGGAGAACTGGCTGCAATGGACCATTGG
AACCGGTGTGCTCCTATGTGTAACACCGGAGACCGTGCGAACTGACGATT
TAACGGCAGTGCCGGTGTGGCAACATCACGTGGCAGCTATAGTGATATTG
CTCGTCTGGCTGGAACTAATGATGTTGGTGGGACGATTCCCCATATTTGG
CGTATATGTTCAAATGTTCACAAAGGTGGCCGTTAACTTTGCGAAATTCT
TGCTTGCCTACATATGCCTGCTGGTGGCTTTTGGCCTCAGCTTTGCCGTG
CTCTTCAATGATTATCCTGCCTTTGAGAACATCACATGGTCCTTTTTGAA
GTCCATCACGATGATGTCTGGGGAACTGGAGTTTGAAGACATATTCTATG
GGGACTATGCCGTCAAATTCCCTGTCACCGCTCACATCATATTTCTCTCC
TTCGTGCTTCTTGTTACGGTAATTTTACCCATCTCATGGTGGGATTGGCC
GTAAGCGACATACATGGATTGCAAGTGAGCGCCACGCCTCGATCGTCTCG
TGCGCCAAGCGGAGCTGGCGTCACGCATGGAAGCTATTTTTCTCCGCTAC
TGCCAGTGCGCCCACTAACTCATCAGCTGGTAGAGGGATGCTCTTTTGGC
CACGTCCGGGACAACTTTCAGTCCATTACCGCCACGACTCGAAATCGTTG
CTGTAGATATAGTTAGTCCTAGCTATGCGTACGGCGAGAACCAAGCTCCG
CGTCCGTCTTAAACGAC
FMO04383.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pyx-RB | 2502 | CG17142-RB | 249..1344 | 37..1122 | 5020 | 97.9 | Plus |
| pyx-RA | 3966 | CG17142-RA | 1713..2808 | 37..1122 | 5020 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 219713..220352 | 676..37 | 3200 | 100 | Minus |
| 3L | 28110227 | 3L | 219290..219646 | 1032..676 | 1630 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:48:19 has no hits.
FMO04383.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:55 Download gff for
FMO04383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyx-RA | 1713..2771 | 37..1086 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:49:41 Download gff for
FMO04383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyx-RB | 249..1307 | 37..1086 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:48 Download gff for
FMO04383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyx-RA | 1713..2771 | 37..1086 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:48 Download gff for
FMO04383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 219227..219645 | 677..1086 | 96 | <- | Minus |
| 3L | 219713..220360 | 32..676 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:55 Download gff for
FMO04383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 219227..219645 | 677..1086 | 96 | <- | Minus |
| arm_3L | 219713..220360 | 32..676 | 99 | -> | Minus |
