FMO04393.5prime Sequence
323 bp (323 high quality bases) assembled on 2008-07-30
> FMO04393.5prime
CTTCGTATAGCATACATTAAACGAAGTTATCAGTCGACATGCGTCTATCC
TCGATCCTGAATGGCCAGCATTTTGGCAACTTGGCCAAGGTGCACGGCAT
CGTCACCTACAAGCTGTCGCCCTTCGAGCAGCGCGCCTTCGCTGGAGCGA
TCAGCAAGGGACTGCCCAACATGGTGCGTCGCTTCCGCTCCAACGTCTTC
ATCGTTACTCCCCCCTTCATCGTGGGATACCTGATCTACGATCTGACCGA
ACGCAAGCACACCGCCCTGCTGCGCAAGAACCCCGCTGACTACGCGAACG
ACGAAGCAAGCTTTCTAGACCAT
FMO04393.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7580-RD | 425 | CG7580-RD | 97..364 | 38..305 | 1340 | 100 | Plus |
| CG7580-RC | 625 | CG7580-RC | 297..564 | 38..305 | 1340 | 100 | Plus |
| CG7580-RB | 746 | CG7580-RB | 97..364 | 38..305 | 1340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17475419..17475594 | 38..213 | 880 | 100 | Plus |
| 3L | 28110227 | 3L | 17475651..17475742 | 214..305 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:50:56 has no hits.
FMO04393.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:17 Download gff for
FMO04393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7580-RB | 91..369 | 31..311 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:42:02 Download gff for
FMO04393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7580-RA | 320..598 | 31..311 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:00 Download gff for
FMO04393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7580-RB | 91..369 | 31..311 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:00 Download gff for
FMO04393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17475413..17475594 | 31..213 | 97 | -> | Plus |
| 3L | 17475651..17475747 | 214..311 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:17 Download gff for
FMO04393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17468513..17468694 | 31..213 | 97 | -> | Plus |
| arm_3L | 17468751..17468847 | 214..311 | 97 | | Plus |
