Clone FMO04394 Report

Search the DGRC for FMO04394

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:43
Well:94
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG31407-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO04394.5prime Sequence

520 bp (520 high quality bases) assembled on 2008-07-30

> FMO04394.5prime
GTATAGCATACATAAAACGAAGTTATCAGTCGACATGATTCCCACTAATC
TGGGCAGACAGAATGGGGCTCTGGTGTTGGAAGTGTTGAAGGTGCTGGGT
CGCCCGGCGACCAGTTACGAGGTGGCGGAAAGAGTGGCCGACGTCTACAG
GCTGCCGCTGCACCGCATCCGTCCCGTGGTCACCGACGTCCTGGAGGCAG
GATCACGACATGGATTCTTTAGCAGCCTCAATGGCCATTATTCGGTGGTG
CAGCCGGTGGTGGAGCAACTGGGACGGGATATAGACCAGTATGCAGCCGA
TATACTGGCGGGATATAGTTGCGAGGGTTCTCTGCCCAAGATGTCGACCC
TGATGCTCAAGCTACAGCAACTGGACGGGTCTCCGCCCATGATGACGGGG
ATCAGGTATCCCCGAGTGAGCTCGGGGGAGCAACGCGAACACATGCCCTC
CGGCGATGTGTCCTTGGACGCCCGTCTCATGCTGCCCTTTCCTCGAGTAC
TAGCAAGCTTTCTAGACCAT

FMO04394.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG31407-RB 778 CG31407-RB 196..663 35..502 2325 99.8 Plus
CG31407-RA 764 CG31407-RA 182..649 35..502 2325 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10022960..10023427 502..35 2325 99.8 Minus
Blast to na_te.dros performed on 2014-11-28 20:03:33 has no hits.

FMO04394.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:24:31 Download gff for FMO04394.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31407-RA 180..657 32..510 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:41:59 Download gff for FMO04394.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31407-RA 180..657 32..510 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:41 Download gff for FMO04394.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31407-RA 180..657 32..510 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:41 Download gff for FMO04394.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10022952..10023429 32..510 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:24:31 Download gff for FMO04394.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5848674..5849151 32..510 98   Minus