FMO04395.5prime Sequence
508 bp (508 high quality bases) assembled on 2008-07-30
> FMO04395.5prime
CATACATAAAACGAAGTTATCAGTCGACATGTCTTCGAAGTCGCCAAGCG
AGCGCCGCCTACACAAAGAGCTGATGTCCCTGATCAAGGAGCCGCCACCA
GGCGTAACCATCGACACCGAGAGCGTACAACAAAATTTATCCGAATGGAA
AATAAACATTAAAGGTTTCGAGGGCACACTTTACGAGGGCGAGGACTTCC
AGCTACTTTTCAAATTCAACAATAAATATCCGTTCGATTCGCCAGAGGTG
ACCTTCATCGGCACCAATATACCGGTGCATCCGCATGTCTACAGCAACGG
ACACATCTGCCTATCCATTCTGACCGAGGACTGGTCCCCGGCGCTGTCCG
TGCAGTCCGTGTGCCTTAGCATAGCCTCCATGTTGAGTAGTTGTCGCGAA
AAGAAGCGTCCGCCGGACAACACGATATACGTAAAAACCTGTAATAAGAA
TCCTAAAAAGACTAAATGGTGGTACCACGATGATTCTGTTGCAAGCTTTC
TAGACCAT
FMO04395.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7220-RC | 1672 | CG7220-RC | 208..669 | 29..490 | 2310 | 100 | Plus |
| CG7220-RA | 1771 | CG7220-RA | 307..768 | 29..490 | 2310 | 100 | Plus |
| CG7220-RD | 1742 | CG7220-RD | 278..739 | 29..490 | 2310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10737058..10737291 | 246..479 | 1170 | 100 | Plus |
| 2R | 25286936 | 2R | 10736893..10736997 | 145..249 | 525 | 100 | Plus |
| 2R | 25286936 | 2R | 10736655..10736748 | 51..144 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:20:32 has no hits.
FMO04395.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:19:19 Download gff for
FMO04395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7220-RD | 306..778 | 22..498 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:47:38 Download gff for
FMO04395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7220-RD | 306..778 | 22..498 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:07:54 Download gff for
FMO04395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7220-RD | 272..744 | 22..498 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:07:54 Download gff for
FMO04395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10736657..10736748 | 53..144 | 100 | -> | Plus |
| 2R | 10736893..10736995 | 145..247 | 100 | -> | Plus |
| 2R | 10737060..10737291 | 248..479 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:19:19 Download gff for
FMO04395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6624162..6624253 | 53..144 | 100 | -> | Plus |
| arm_2R | 6624398..6624500 | 145..247 | 100 | -> | Plus |
| arm_2R | 6624565..6624796 | 248..479 | 100 | | Plus |
