FMO04396.5prime Sequence
707 bp (707 high quality bases) assembled on 2008-07-30
> FMO04396.5prime
TAGCATACAAAAAAAAGAAGTTATCAGTCGACATGACCGATTCGGACGAA
TCTTCCTGGATTCATTGGTTTTGCAAGCAGCGTGGCAACGAATTCTTTTG
CGAGGTGGATGAGGAATATATCCAGGACAAGTTTAACCTTAACTTTCTTG
ATTCGAACGTTAAGAACTACAAATGTGCCTTGGAGGTGATCCTGGATCTC
AATCCGGGTTCAGCCTCGGAAGACCCCGCTGAACCAGAACTGGAGGCTAG
TGCAGAGAAACTGTATGGCTTGATCCACGCTCGTTTTATCCTAACCAACC
GGGGCATCGAACTGATGTTGGACAAGTACAACAAGGGCGAATTCGGGACA
TGTCCACGTGCATTCTGCCATAGCCAGCCGGTGCTGCCCATTGGTTTGAG
TGATAATCCTGGCGAGGATATGGTACGCATCTATTGCCCCAAGTGCAATG
ATGTGTACATTCCCAAGGCGTCGAGACATTCGAATCTGGATGGAGCCTTC
TTTGGCACTGGATTCCCTCATATGTTCTTTATGGAGAAACCGGATGCTAG
GCCCAAGCGGGCAAAGCAGAAGTTTGTGCCCAGGCTTTATGGCTTTAAAA
TCCACCCCACGGCCTACCGTACTGCCGCTGAGATCCAAAAAGATGTGACA
ATGACGCCAGTAGGAGAAATCGATAGCCCATCCCACATCGCAAGCTTTCT
AGACCAT
FMO04396.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:01:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CkIIbeta2-RA | 912 | CG8914-RA | 135..790 | 33..688 | 3190 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:01:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20289679..20290230 | 33..584 | 2670 | 98.9 | Plus |
| 2R | 25286936 | 2R | 20290319..20290428 | 579..688 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:01:17 has no hits.
FMO04396.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:16 Download gff for
FMO04396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIIbeta2-RA | 130..790 | 25..688 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:44:52 Download gff for
FMO04396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIIbeta2-RA | 48..708 | 25..688 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:34 Download gff for
FMO04396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIIbeta2-RA | 130..790 | 25..688 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:34 Download gff for
FMO04396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20290324..20290428 | 584..688 | 100 | | Plus |
| 2R | 20289674..20290229 | 25..583 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:16 Download gff for
FMO04396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16177179..16177734 | 25..583 | 98 | -> | Plus |
| arm_2R | 16177829..16177933 | 584..688 | 100 | | Plus |
