FMO04404.5prime Sequence
751 bp (751 high quality bases) assembled on 2008-07-30
> FMO04404.5prime
CATACATTATACGAAGTTATCAGTCGACATGAGTACTATTGGCACTGGAT
ACGACTTGTCGGCCTCGCAGTTTTCGCCTGATGGCCGCGTTTTCCAGATC
GACTACGCCTCAAAGGCGGTGGAGAAGAGCGGCACCGTAATCGGGATTCG
GGGCAAGGACGCCGTGGTGCTGGCCGTGGAGAAGATCATCACCAGTAAAC
TGTACGAACCAGACGCCGGCGGACGCATCTTCACCATCGAAAAGAACATC
GGAATGGCGGTGGCCGGCTTGGTGGCCGATGGAAACTTTGTGGCTGACAT
TGCGCGTCAGGAGGCAGCCAACTACAGACAGCAATTTGAGCAGGCTATCC
CGCTTAAACACCTGTGCCACCGAGTCGCCGGCTACGTTCACGCCTACACT
CTGTACAGTGCCGTCCGCCCCTTCGGACTTTCCATCATTCTCGCCTCCTT
CGGTTACTTCGCCTGCGCCAGCGGCAAGGCCAAGCAGCTGGCCAAGACTG
AGATGGAGAAGCTCAAGATGGATATGAGGACCGACGAATTGGTGGAGAGC
GCTGGTGAAATCATCTACAAAGTCCATGACGAGTTGAAGGACAAGGACTT
CCGCTTCGAAATGGGTTTGGTGGGCAGGGTAACCGGTGGCCTACATCTCA
TAAATCCCTCAGAACTGACGGAGAAGGCGAGGAAAGCCGGCGATGCGGCC
AACAAGGACGAAGACAGCGACAATGAGACGCACGCAAGCTTTCTAGACCA
T
FMO04404.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosalpha7-RA | 976 | CG1519-RA | 120..540 | 29..449 | 2105 | 100 | Plus |
| Prosalpha7-RA | 976 | CG1519-RA | 589..878 | 444..733 | 1450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9847239..9847638 | 449..50 | 2000 | 100 | Minus |
| 2R | 25286936 | 2R | 9846734..9846905 | 733..562 | 860 | 100 | Minus |
| 2R | 25286936 | 2R | 9847073..9847190 | 561..444 | 590 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 23:14:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1c | 5443 | Rt1c RT1C 5443bp | 1817..1864 | 484..533 | 136 | 80 | Plus |
FMO04404.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:15:05 Download gff for
FMO04404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha7-RA | 112..538 | 20..447 | 99 | <- | Plus |
| Prosalpha7-RA | 593..883 | 448..741 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:48:33 Download gff for
FMO04404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha7-RB | 110..827 | 20..741 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:16 Download gff for
FMO04404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha7-RA | 112..538 | 20..447 | 99 | <- | Plus |
| Prosalpha7-RA | 593..883 | 448..741 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:16 Download gff for
FMO04404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9846729..9846905 | 562..741 | 97 | <- | Minus |
| 2R | 9847073..9847192 | 443..561 | 98 | <- | Minus |
| 2R | 9847246..9847638 | 50..442 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:15:05 Download gff for
FMO04404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5734234..5734410 | 562..741 | 97 | <- | Minus |
| arm_2R | 5734578..5734697 | 443..561 | 98 | <- | Minus |
| arm_2R | 5734751..5735143 | 50..442 | 100 | <- | Minus |
