FMO04406.5prime Sequence
766 bp (766 high quality bases) assembled on 2008-07-30
> FMO04406.5prime
CATAATAAGAAGTTATCAGTCGACATGGCCACCCAGGGAAAGAGCGTGGA
CTTTAGCGTATTGGAGTTTGACAATTACAATGACTACATCTCCTCGTTTG
CCACCGTCACGGACCACAGATATCTGGGCAATCAAAACACGATCAAGACC
ATCGTCCAGCTGGGTTACCGCACCACCAAGATACCCTACACAGCCGAAGA
GTATGAGAAGAGGGTTGACCTGGCCCTGGAGGCCATTAGGCCGAAGCTGG
CACACGTGGGCCTGTTCAGCGACCTCCTGTCGCCGACGAACAGGGACCCA
GTTCTTCTGGAGTTCAAGGCCCGCGAGCTGCTCAACTTGAACAAGATACT
ATCGACCATCGTTTTTACCTCGTACATCCACATGGACGGCTCGGAGATCT
CCGGCTACATAGACCTGGACATGAGCTGGCGCAACTGCTTCCGCGAGGCA
ATCAAGCACACGGACTGGCGGGGAGTCTTCCAAGGTCGCTCTTGGCCTGA
AGCCCATGCCACACCATCTCAGCTACTCGAATCCCCGGTATAACGTGGTC
AAGTACACGGATAGCGATAACTACCAGGTGATGCACGACCATCACTTCGG
ACTGATGTTCATGCATCGCGGTGACCACAAAATGATTTCGGTGGGCGGCC
AGTTCAACATTTACTCGAGGAACGCCAAGCGATCGATGGTCTACTCTCCC
AAGTTCGGGTATGTTGTGTTCTACGATCACTTTGTCCGCAAGAAGGTAGC
AAGCTTTCTAGACCAT
FMO04406.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:33:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14013-RA | 955 | CG14013-RA | 136..858 | 25..748 | 3535 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:33:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5552940..5553333 | 748..354 | 1880 | 99 | Minus |
| 2L | 23513712 | 2L | 5553386..5553715 | 354..25 | 1635 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:33:10 has no hits.
FMO04406.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:36:53 Download gff for
FMO04406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14013-RA | 136..858 | 25..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:45:36 Download gff for
FMO04406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14013-RA | 134..856 | 25..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:09 Download gff for
FMO04406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14013-RA | 136..858 | 25..748 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:09 Download gff for
FMO04406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5552940..5553332 | 355..748 | 98 | <- | Minus |
| 2L | 5553386..5553715 | 25..354 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:36:53 Download gff for
FMO04406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5552940..5553332 | 355..748 | 98 | <- | Minus |
| arm_2L | 5553386..5553715 | 25..354 | 99 | | Minus |
